LOC645177 Gene (Protein Coding)

Uncharacterized LOC645177

GC12P024997
GIFtS:
10
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Aliases for LOC645177 Gene

Aliases for LOC645177 Gene

  • Uncharacterized LOC645177 3
  • Uncharacterized Protein LOC645177 3

External Ids for LOC645177 Gene

Previous GeneCards Identifiers for LOC645177 Gene

  • GC12P025048
  • GC12P025157
  • GC12P025011

Summaries for LOC645177 Gene

GeneCards Summary for LOC645177 Gene

LOC645177 (Uncharacterized LOC645177) is a Protein Coding gene.

Additional gene information for LOC645177 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC645177 Gene

Genomics for LOC645177 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC645177 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J024995 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 600.7 -0.3 -262 4.2 RNF2 BACH1 STAT3 JUND ZNF143 RELA SMAD5 TCF12 IKZF2 RCOR1 LOC645177 C12orf77 IRAG2 piR-56759-108 BCAT1
GH12J025050 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +56.3 56343 6.6 SP1 POLR2A LARP7 STAT3 JUND PKNOX1 SMAD5 TCF12 IKZF2 RCOR1 IRAG2 CFAP94 ETFRF1 C12orf77 KRAS piR-61945-093 NONHSAG010702.2 LOC645177
GH12J025004 Enhancer 0.8 Ensembl ENCODE 0.4 +8.0 7951 1.3 IKZF2 POLR2A ARID3A PAX8 DPF2 RUNX3 ZNF592 ARNT ELF1 IKZF1 C12orf77 IRAG2 BCAT1 LOC645177
GH12J024991 Enhancer 0.8 Ensembl ENCODE 0.4 -5.9 -5874 0.6 CTCF REST RAD21 TRIM22 GATAD2B ARID3A ZNF639 ZNF10 ZSCAN5C SMC3 C12orf77 piR-56759-108 LOC645177 BRI3P2 lnc-BCAT1-3 BCAT1
GH12J025020 Enhancer 1 Ensembl ENCODE 0.4 +23.3 23305 1 SP1 BACH1 ZNF143 RELA TCF12 IKZF2 RCOR1 TRIM22 EED ARID3A FJ601684-070 C12orf77 IRAG2 LOC645177 piR-31534-127 CFAP94
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC645177 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC645177

Top Transcription factor binding sites by QIAGEN in the LOC645177 gene promoter:
  • Msx-1
  • Sox5

Genomic Locations for LOC645177 Gene

Genomic Locations for LOC645177 Gene
chr12:24,997,575-25,052,457
(GRCh38/hg38)
Size:
54,883 bases
Orientation:
Plus strand
chr12:25,157,276-25,191,075
(GRCh37/hg19)
Size:
33,800 bases
Orientation:
Plus strand

Genomic View for LOC645177 Gene

Genes around LOC645177 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC645177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC645177 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC645177 Gene

Proteins for LOC645177 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC645177 Gene

No Post-translational modifications

Other Protein References for LOC645177 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC645177 Gene

Domains & Families for LOC645177 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC645177 Gene

Function for LOC645177 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC645177 Gene

Phenotypes for LOC645177 Gene

GenomeRNAi human phenotypes for LOC645177:
genes like me logo Genes that share phenotypes with LOC645177: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC645177 Gene

Localization for LOC645177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC645177 Gene

Pathways & Interactions for LOC645177 Gene

PathCards logo

SuperPathways for LOC645177 Gene

No Data Available

Interacting Proteins for LOC645177 Gene

Gene Ontology (GO) - Biological Process for LOC645177 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC645177 Gene

Drugs & Compounds for LOC645177 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC645177 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC645177 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC645177 Gene

No ASD Table

Relevant External Links for LOC645177 Gene

GeneLoc Exon Structure for
LOC645177

Expression for LOC645177 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC645177 Gene

mRNA expression in normal human tissues for LOC645177 Gene
mRNA expression by GTEx for LOC645177 Gene

SOURCE GeneReport for Unigene cluster for LOC645177 Gene:

Hs.569157
genes like me logo Genes that share expression patterns with LOC645177: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC645177 Gene

Orthologs for LOC645177 Gene

No data available for Orthologs and Evolution for LOC645177 Gene

Paralogs for LOC645177 Gene

No data available for Paralogs for LOC645177 Gene

Variants for LOC645177 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC645177 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC645177 Gene

Disorders for LOC645177 Gene

Additional Disease Information for LOC645177

Genetic Association Database
(GAD)

No disorders were found for LOC645177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC645177 Gene

Publications for LOC645177 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for LOC645177 Gene

Products for LOC645177 Gene

Sources for LOC645177 Gene