Aliases for LOC645139 Gene

Aliases for LOC645139 Gene

  • Poly(A) Binding Protein Interacting Protein 1 Pseudogene 3
  • Poly(A) Binding Protein Interacting Protein 1 (PAIP1) Pseudogene 5
  • AC026271.1 5

External Ids for LOC645139 Gene

Previous GeneCards Identifiers for LOC645139 Gene

  • GC17P018489
  • GC17P018554
  • GC17P018555

Summaries for LOC645139 Gene

GeneCards Summary for LOC645139 Gene

LOC645139 (Poly(A) Binding Protein Interacting Protein 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC645139 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC645139 Gene

Genomics for LOC645139 Gene

GeneHancer (GH) Regulatory Elements for LOC645139 Gene

Promoters and enhancers for LOC645139 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J018650 Promoter 0.3 Ensembl 500.7 +0.2 206 0.8 LOC645139 lnc-TRIM16L-2 ENSG00000287058 lnc-TBC1D28-5 piR-55924-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC645139 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC645139 gene promoter:
  • AP-2gamma
  • c-Ets-1
  • CUTL1
  • HFH-1
  • Nkx3-1
  • Nkx3-1 v1
  • Pax-4a
  • Pax-6
  • RSRFC4
  • Spz1

Genomic Locations for LOC645139 Gene

Genomic Locations for LOC645139 Gene
chr17:18,650,195-18,651,542
(GRCh38/hg38)
Size:
1,348 bases
Orientation:
Plus strand
chr17:18,553,508-18,554,855
(GRCh37/hg19)
Size:
1,348 bases
Orientation:
Plus strand

Genomic View for LOC645139 Gene

Genes around LOC645139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC645139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC645139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC645139 Gene

Proteins for LOC645139 Gene

Post-translational modifications for LOC645139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC645139 Gene

Domains & Families for LOC645139 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC645139 Gene

Function for LOC645139 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC645139 Gene

Localization for LOC645139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC645139 Gene

Pathways & Interactions for LOC645139 Gene

PathCards logo

SuperPathways for LOC645139 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC645139 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC645139 Gene

Drugs & Compounds for LOC645139 Gene

No Compound Related Data Available

Transcripts for LOC645139 Gene

mRNA/cDNA for LOC645139 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC645139 Gene

No ASD Table

Relevant External Links for LOC645139 Gene

GeneLoc Exon Structure for
LOC645139

Expression for LOC645139 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC645139 Gene

genes like me logo Genes that share expression patterns with LOC645139: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC645139 Gene

Orthologs for LOC645139 Gene

Evolution for LOC645139 Gene

ENSEMBL:
Gene Tree for LOC645139 (if available)
TreeFam:
Gene Tree for LOC645139 (if available)

No data available for Orthologs for LOC645139 Gene

Paralogs for LOC645139 Gene

No data available for Paralogs for LOC645139 Gene

Variants for LOC645139 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC645139 Gene

Disorders for LOC645139 Gene

No disorders were found for LOC645139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC645139 Gene

Publications for LOC645139 Gene

No publications were found for LOC645139 Gene.

No data available for Mastermind for LOC645139 Gene

Products for LOC645139 Gene

Sources for LOC645139 Gene