Aliases for LOC644669 Gene

Aliases for LOC644669 Gene

  • Ankyrin Repeat Domain 30B Pseudogene 3

External Ids for LOC644669 Gene

Previous GeneCards Identifiers for LOC644669 Gene

  • GC18M015297
  • GC18M015316
  • GC18M015636
  • GC18M015744
  • GC18M015406
  • GC18M015491
  • GC18M015540

Summaries for LOC644669 Gene

GeneCards Summary for LOC644669 Gene

LOC644669 (Ankyrin Repeat Domain 30B Pseudogene) is a Pseudogene.

Additional gene information for LOC644669 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC644669 Gene

Genomics for LOC644669 Gene

GeneHancer (GH) Regulatory Elements for LOC644669 Gene


Top Transcription factor binding sites by QIAGEN in the LOC644669 gene promoter:
  • aMEF-2
  • ATF-2
  • Bach1
  • COMP1
  • MEF-2A
  • Nkx2-2
  • POU2F1
  • POU2F1a

Genomic Locations for LOC644669 Gene

Genomic Locations for LOC644669 Gene
chr18:15,313,556-15,325,919
(GRCh38/hg38)
Size:
12,364 bases
Orientation:
Minus strand
chr18:15,307,662-15,330,281
(GRCh37/hg19)
Size:
22,620 bases
Orientation:
Minus strand

Genomic View for LOC644669 Gene

Genes around LOC644669 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644669 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644669 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644669 Gene

Proteins for LOC644669 Gene

Post-translational modifications for LOC644669 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644669 Gene

Domains & Families for LOC644669 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC644669 Gene

Function for LOC644669 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644669 Gene

Localization for LOC644669 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC644669 Gene

Pathways & Interactions for LOC644669 Gene

PathCards logo

SuperPathways for LOC644669 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC644669 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC644669 Gene

Drugs & Compounds for LOC644669 Gene

No Compound Related Data Available

Transcripts for LOC644669 Gene

mRNA/cDNA for LOC644669 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644669 Gene

No ASD Table

Relevant External Links for LOC644669 Gene

GeneLoc Exon Structure for
LOC644669

Expression for LOC644669 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC644669 Gene

mRNA differential expression in normal tissues according to GTEx for LOC644669 Gene

This gene is overexpressed in Testis (x39.7).
genes like me logo Genes that share expression patterns with LOC644669: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC644669 Gene

Orthologs for LOC644669 Gene

No data available for Orthologs and Evolution for LOC644669 Gene

Paralogs for LOC644669 Gene

No data available for Paralogs for LOC644669 Gene

Variants for LOC644669 Gene

Sequence variations from dbSNP and Humsavar for LOC644669 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000181558 -- 15,324,477(-) G/A intron_variant
rs1000705930 -- 15,313,239(-) G/A downstream_transcript_variant
rs1000936895 -- 15,313,597(-) G/A non_coding_transcript_variant
rs1002024909 -- 15,324,206(-) A/G intron_variant
rs1002480724 -- 15,323,908(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC644669 Gene

Variant ID Type Subtype PubMed ID
dgv3323n100 CNV gain 25217958
esv2758715 CNV gain 17122850
esv2761993 CNV gain 21179565
esv3641923 CNV loss 21293372
nsv1064907 CNV gain 25217958
nsv1076453 CNV duplication 25765185
nsv1115528 CNV duplication 24896259
nsv527649 CNV loss 19592680
nsv960267 CNV duplication 23825009
nsv960684 CNV duplication 23825009

Additional Variant Information for LOC644669 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LOC644669

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LOC644669 Gene

Disorders for LOC644669 Gene

No disorders were found for LOC644669 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC644669 Gene

Publications for LOC644669 Gene

  1. The scaffold protein KSR1, a novel therapeutic target for the treatment of Merlin-deficient tumors. (PMID: 26549023) Zhou L … Hanemann CO (Oncogene 2016) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC644669 Gene

Products for LOC644669 Gene

Sources for LOC644669 Gene