Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC644422 Gene

Aliases for LOC644422 Gene

  • Serine And Arginine Rich Splicing Factor 6 Pseudogene 3
  • AC005822.1 5

External Ids for LOC644422 Gene

Previous GeneCards Identifiers for LOC644422 Gene

  • GC17M016461
  • GC17M016522
  • GC17M016523

Summaries for LOC644422 Gene

GeneCards Summary for LOC644422 Gene

LOC644422 (Serine And Arginine Rich Splicing Factor 6 Pseudogene) is a Pseudogene.

Additional gene information for LOC644422 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC644422 Gene

Genomics for LOC644422 Gene

GeneHancer (GH) Regulatory Elements for LOC644422 Gene

Promoters and enhancers for LOC644422 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I016617 Promoter 0.5 Ensembl 550.8 +0.1 80 0.4 PIR41703 LOC644422 NEK4P2 ZNF624 GC17P016578
GH17I016406 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 54.7 +210.2 210170 2.2 HDGF SMAD1 ZFP64 SIN3A FEZF1 YBX1 IRF4 ZNF213 ZNF207 ZNF548 PIGL PPIAP53 ENSG00000266538 NCOR1 TVP23C MPRIP-AS1 ZNF286A LOC644422 UPF3AP1 MPRIP
GH17I016438 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 36 +176.5 176463 6.8 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A ENSG00000266651 GC17P016458 GC17P016459 GC17P016461 GC17P016462 GC17P016463 PIR56387 PIR35161 SNORD49A SNORD49B
GH17I016212 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 26.9 +402.4 402354 5.9 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZFP41 PIGL NCOR1 ZSWIM7 ENSG00000266538 PPIAP53 TVP23C LOC644422 ZNF286A UPF3AP1 MPRIP-AS1
GH17I016377 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 22.8 +237.8 237780 4.6 ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC PPARGC1A UBB ENSG00000266538 PPIAP53 PIGL NCOR1 TVP23C LOC644422 LRRC75A-AS1 FLCN ACTG1P24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC644422 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC644422 gene promoter:

Genomic Locations for LOC644422 Gene

Genomic Locations for LOC644422 Gene
chr17:16,616,848-16,617,881
(GRCh38/hg38)
Size:
1,034 bases
Orientation:
Minus strand
chr17:16,520,162-16,521,195
(GRCh37/hg19)

Genomic View for LOC644422 Gene

Genes around LOC644422 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644422 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644422 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644422 Gene

Proteins for LOC644422 Gene

Post-translational modifications for LOC644422 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644422 Gene

Domains & Families for LOC644422 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC644422 Gene

Function for LOC644422 Gene

Phenotypes From GWAS Catalog for LOC644422 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644422 Gene

Localization for LOC644422 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC644422 Gene

Pathways & Interactions for LOC644422 Gene

SuperPathways for LOC644422 Gene

No Data Available

Interacting Proteins for LOC644422 Gene

Gene Ontology (GO) - Biological Process for LOC644422 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC644422 Gene

Drugs & Compounds for LOC644422 Gene

No Compound Related Data Available

Transcripts for LOC644422 Gene

mRNA/cDNA for LOC644422 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644422 Gene

No ASD Table

Relevant External Links for LOC644422 Gene

GeneLoc Exon Structure for
LOC644422

Expression for LOC644422 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC644422 Gene

genes like me logo Genes that share expression patterns with LOC644422: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC644422 Gene

Orthologs for LOC644422 Gene

Evolution for LOC644422 Gene

ENSEMBL:
Gene Tree for LOC644422 (if available)
TreeFam:
Gene Tree for LOC644422 (if available)

No data available for Orthologs for LOC644422 Gene

Paralogs for LOC644422 Gene

No data available for Paralogs for LOC644422 Gene

Variants for LOC644422 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC644422 Gene

Disorders for LOC644422 Gene

No disorders were found for LOC644422 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC644422 Gene

Publications for LOC644422 Gene

  1. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58

Products for LOC644422 Gene

Sources for LOC644422 Gene

Content
Loading form....