Aliases for LOC644277 Gene

Data sources for LOC644277 Gene:

RNA type for LOC644277 Gene

ncRNA

Aliases for LOC644277 Gene

External Ids for LOC644277 Gene

Previous GeneCards Identifiers for LOC644277 Gene

  • GC11P110804
  • GC11P111299
  • GC11P111428
  • GC11P111457
  • GC11P111460

Summaries for LOC644277 Gene

GeneCards Summary for LOC644277 Gene

LOC644277 (Uncharacterized LOC644277) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC644277 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC644277 Gene

Genomics for LOC644277 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC644277 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J111450 Enhancer 0.2 Ensembl 250.7 +0.6 563 0.6 ENSG00000255093 LOC644277 lnc-C11orf88-2 lnc-C11orf88-3 POU2AF1 lnc-POU2AF1-3 BTG4 COLCA2
GH11J111448 Enhancer 0.2 Ensembl 250.7 -0.6 -637 1 ENSG00000255093 LOC644277 lnc-C11orf88-3 PPP2R1B LOC107984386 POU2AF1 lnc-POU2AF1-3 BTG4 COLCA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC644277 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC644277 gene promoter:
  • AP-1
  • c-Fos
  • c-Jun
  • C/EBPbeta
  • FosB
  • Fra-1
  • Ik-1
  • JunB
  • JunD
  • Pax-5

Genomic Locations for LOC644277 Gene

Latest Assembly
chr11:111,449,338-111,453,545
(GRCh38/hg38)
Size:
4,208 bases
Orientation:
Plus strand

Genomic View for LOC644277 Gene

Genes around LOC644277 on UCSC Golden Path with GeneCards custom track
LOC644277 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC644277 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644277 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644277 Gene

Proteins for LOC644277 Gene

Post-translational modifications for LOC644277 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644277 Gene

Domains & Families for LOC644277 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC644277 Gene

Function for LOC644277 Gene

Phenotypes From GWAS Catalog for LOC644277 Gene

genes like me logo Genes that share phenotypes with LOC644277: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644277 Gene

Localization for LOC644277 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC644277 Gene

Pathways & Interactions for LOC644277 Gene

PathCards logo

SuperPathways for LOC644277 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC644277 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC644277 Gene

Drugs & Compounds for LOC644277 Gene

No Compound Related Data Available

Transcripts for LOC644277 Gene

LOC644277 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

mRNA/cDNA for LOC644277 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644277 Gene

No ASD Table

Relevant External Links for LOC644277 Gene

GeneLoc Exon Structure for
LOC644277

Expression for LOC644277 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC644277 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC644277

SOURCE GeneReport for Unigene cluster for LOC644277 Gene:

Hs.577348
genes like me logo Genes that share expression patterns with LOC644277: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC644277 Gene

Orthologs for LOC644277 Gene

No data available for Orthologs and Evolution for LOC644277 Gene

Paralogs for LOC644277 Gene

No data available for Paralogs for LOC644277 Gene

Variants for LOC644277 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC644277 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC644277 Gene

Disorders for LOC644277 Gene

No disorders were found for LOC644277 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC644277 Gene

Publications for LOC644277 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC644277 Gene

Products for LOC644277 Gene

Sources for LOC644277 Gene