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Aliases for LOC644277 Gene

Subcategory (RNA class) for LOC644277 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC644277 Gene

  • Uncharacterized LOC644277 3
  • AP002008.2 5

External Ids for LOC644277 Gene

Previous GeneCards Identifiers for LOC644277 Gene

  • GC11P110804
  • GC11P111299

Summaries for LOC644277 Gene

GeneCards Summary for LOC644277 Gene

LOC644277 (Uncharacterized LOC644277) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC644277 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC644277 Gene

Genomics for LOC644277 Gene

GeneHancer (GH) Regulatory Elements for LOC644277 Gene

Promoters and enhancers for LOC644277 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I111445 Enhancer 1.1 Ensembl ENCODE 550.8 +0.5 514 1.2 HDGF PKNOX1 ARNT ARID4B ZNF2 IRF4 ARID2 ZNF143 ATF7 KLF7 LOC644277 MIR34B MIR34C C11orf88 BTG4 LAYN ENSG00000254980 DIXDC1 POU2AF1
GH11I111375 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 10.8 -67.4 -67399 5.1 HDGF PKNOX1 RB1 BMI1 BATF KLF5 IRF4 ZBTB40 ZNF207 ZNF143 POU2AF1 COLCA1 COLCA2 LOC644277 C11orf88 BTG4 MIR34B MIR34C RNU2-60P MIR4491
GH11I111530 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11 +85.7 85687 1.9 USF1 MAX EBF1 ZIC2 ZNF335 ATF7 FOSL2 FOS RUNX3 SRF POU2AF1 LOC644277 COLCA2 LAYN ENSG00000254980 C11orf88
GH11I111776 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.5 +332.0 331994 2.7 HDGF FOXA2 PKNOX1 SMAD1 ARID4B DMAP1 YY1 ARID2 ZNF143 ATF7 ENSG00000254990 PPP2R1B SIK2 LOC644277 POU2AF1 BTG4 C11orf88 MIR34B MIR34C ENSG00000254980
GH11I111423 Enhancer 1.1 ENCODE dbSUPER 12 -22.7 -22735 0.2 ARID4B DMAP1 ZNF48 ZNF143 RUNX3 NFYC MXD4 REST MIER2 PPARG LOC644277 POU2AF1 COLCA1 COLCA2 RNU2-60P MIR34B MIR34C BTG4 C11orf88 LAYN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC644277 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC644277 gene promoter:

Genomic Locations for LOC644277 Gene

Genomic Locations for LOC644277 Gene
chr11:111,445,886-111,475,397
(GRCh38/hg38)
Size:
29,512 bases
Orientation:
Plus strand
chr11:111,322,064-111,328,876
(GRCh37/hg19)

Genomic View for LOC644277 Gene

Genes around LOC644277 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644277 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644277 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644277 Gene

Proteins for LOC644277 Gene

Post-translational modifications for LOC644277 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644277 Gene

Domains & Families for LOC644277 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC644277 Gene

Function for LOC644277 Gene

Phenotypes for LOC644277 Gene

GenomeRNAi human phenotypes for LOC644277:
genes like me logo Genes that share phenotypes with LOC644277: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644277 Gene

Localization for LOC644277 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC644277 Gene

Pathways & Interactions for LOC644277 Gene

SuperPathways for LOC644277 Gene

No Data Available

Interacting Proteins for LOC644277 Gene

Gene Ontology (GO) - Biological Process for LOC644277 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC644277 Gene

Drugs & Compounds for LOC644277 Gene

No Compound Related Data Available

Transcripts for LOC644277 Gene

mRNA/cDNA for LOC644277 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC644277 Gene

Uncharacterized LOC644277:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644277 Gene

No ASD Table

Relevant External Links for LOC644277 Gene

GeneLoc Exon Structure for
LOC644277

Expression for LOC644277 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC644277 Gene

SOURCE GeneReport for Unigene cluster for LOC644277 Gene:

Hs.577348
genes like me logo Genes that share expression patterns with LOC644277: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC644277 Gene

Orthologs for LOC644277 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC644277 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 94 (a)
OneToOne
Species where no ortholog for LOC644277 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC644277 Gene

ENSEMBL:
Gene Tree for LOC644277 (if available)
TreeFam:
Gene Tree for LOC644277 (if available)

Paralogs for LOC644277 Gene

No data available for Paralogs for LOC644277 Gene

Variants for LOC644277 Gene

Sequence variations from dbSNP and Humsavar for LOC644277 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000383110 -- 111,450,149(+) G/A/C intron_variant
rs1000720270 -- 111,448,692(+) A/T upstream_transcript_variant
rs1001166321 -- 111,449,311(+) C/G upstream_transcript_variant
rs1002441703 -- 111,448,716(+) T/C upstream_transcript_variant
rs1002826736 -- 111,447,899(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC644277 Gene

Disorders for LOC644277 Gene

Additional Disease Information for LOC644277

No disorders were found for LOC644277 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC644277 Gene

Publications for LOC644277 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC644277 Gene

Sources for LOC644277 Gene

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