Aliases for LOC644135 Gene

Subcategory (RNA class) for LOC644135 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC644135 Gene

  • Uncharacterized LOC644135 3

External Ids for LOC644135 Gene

Previous GeneCards Identifiers for LOC644135 Gene

  • GC06M136433
  • GC06U901856
  • GC06M136365
  • GC06M136043

Summaries for LOC644135 Gene

GeneCards Summary for LOC644135 Gene

LOC644135 (Uncharacterized LOC644135) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC644135 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC644135 Gene

Genomics for LOC644135 Gene

GeneHancer (GH) Regulatory Elements for LOC644135 Gene

Promoters and enhancers for LOC644135 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J136115 Enhancer 0.9 Ensembl dbSUPER 500.7 +1.1 1068 0.2 ZNF639 ZNF10 TRIM28 ATF2 OSR2 WT1 TCF7L2 PBX2 KLF8 ZBTB1 LOC644135 COX5BP2 ENSG00000237596 PDE7B
GH06J136118 Enhancer 0.6 dbSUPER 500.7 -1.9 -1895 0.4 NCOR1 PBX2 NR2F2 TAL1 POLR2A DPF2 MEIS2 ARID1B ATF3 PKNOX1 LOC644135 piR-36588-391 ENSG00000237596 PDE7B
GH06J136116 Enhancer 0.4 Ensembl dbSUPER 500.7 -0.1 -131 0.6 FOS LOC644135 piR-36588-391 ENSG00000237596 PDE7B
GH06J136117 Enhancer 0.3 Ensembl dbSUPER 500.7 -0.7 -732 0.2 LOC644135 piR-36588-391 ENSG00000237596 PDE7B
GH06J136113 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.4 3368 2.4 EP300 TRIM28 RFX1 ATF2 MXI1 MYNN SMC3 ZBTB17 GATA3 GABPA BCLAF1 LOC644135 COX5BP2 ENSG00000237596 PDE7B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC644135 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC644135 Gene

Genomic Locations for LOC644135 Gene
chr6:136,012,648-136,117,169
(GRCh38/hg38)
Size:
104,522 bases
Orientation:
Minus strand
chr6:136,364,990-136,393,965
(GRCh37/hg19)
Size:
28,976 bases
Orientation:
Minus strand

Genomic View for LOC644135 Gene

Genes around LOC644135 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644135 Gene

Proteins for LOC644135 Gene

Post-translational modifications for LOC644135 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644135 Gene

Domains & Families for LOC644135 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC644135 Gene

Function for LOC644135 Gene

Phenotypes From GWAS Catalog for LOC644135 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644135 Gene

Localization for LOC644135 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC644135 Gene

Pathways & Interactions for LOC644135 Gene

PathCards logo

SuperPathways for LOC644135 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC644135 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC644135 Gene

Drugs & Compounds for LOC644135 Gene

No Compound Related Data Available

Transcripts for LOC644135 Gene

mRNA/cDNA for LOC644135 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644135 Gene

No ASD Table

Relevant External Links for LOC644135 Gene

GeneLoc Exon Structure for
LOC644135

Expression for LOC644135 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC644135 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC644135

SOURCE GeneReport for Unigene cluster for LOC644135 Gene:

Hs.126980
genes like me logo Genes that share expression patterns with LOC644135: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC644135 Gene

Orthologs for LOC644135 Gene

No data available for Orthologs and Evolution for LOC644135 Gene

Paralogs for LOC644135 Gene

No data available for Paralogs for LOC644135 Gene

Variants for LOC644135 Gene

Additional dbSNP identifiers (rs#s) for LOC644135 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC644135 Gene

Disorders for LOC644135 Gene

No disorders were found for LOC644135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC644135 Gene

Publications for LOC644135 Gene

  1. Genome-wide association study of the rate of cognitive decline in Alzheimer's disease. (PMID: 23535033) Sherva R … Alzheimer's Disease Genetics Consortium (Alzheimer's & dementia : the journal of the Alzheimer's Association 2014) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC644135 Gene

Products for LOC644135 Gene

Sources for LOC644135 Gene