Aliases for LOC643802 Gene

Aliases for LOC643802 Gene

  • U3 Small Nucleolar Ribonucleoprotein Protein MPP10-Like 3 5
  • Uncharacterized Protein LOC643802 3
  • AC007342.3 5

External Ids for LOC643802 Gene

Previous GeneCards Identifiers for LOC643802 Gene

  • GC16M051953
  • GC16M053403

Summaries for LOC643802 Gene

GeneCards Summary for LOC643802 Gene

LOC643802 (U3 Small Nucleolar Ribonucleoprotein Protein MPP10-Like) is a Protein Coding gene. Among its related pathways are Ribosome biogenesis in eukaryotes.

Additional gene information for LOC643802 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643802 Gene

Genomics for LOC643802 Gene

GeneHancer (GH) Regulatory Elements for LOC643802 Gene

Promoters and enhancers for LOC643802 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J053372 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 500.7 -0.5 -518 1.6 ZNF217 ZFX POLR2A ZBTB26 CTBP1 EZH2 ZNF585B SIN3A KLF9 ZBTB17 ENSG00000261804 LOC643802 LOC102723373 lnc-AKTIP-6 RBL2 ENSG00000262714
GH16J053374 Promoter 0.5 Ensembl 500.7 -1.8 -1818 0.2 HLF CEBPB ENSG00000261804 LOC643802 LOC102723373 lnc-AKTIP-6 ENSG00000262714
GH16J053517 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 24 -145.7 -145716 2.8 ZBTB40 SP1 EP300 RELA MEF2C RCOR1 RUNX1 CTBP1 TRIM22 POLR2A LOC105371268 RBL2 LOC643802 AKTIP piR-58834
GH16J053369 Promoter 0.6 Ensembl 0.7 +3.2 3182 1 CEBPG CEBPB EP300 GATA3 CEBPA ENSG00000262714 LOC643802 LOC101929000 lnc-AKTIP-6
GH16J053365 Enhancer 0.2 Ensembl 0.4 +7.2 7182 0.2 LOC101929000 piR-32966-009 LOC643802
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643802 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC643802

Top Transcription factor binding sites by QIAGEN in the LOC643802 gene promoter:
  • Bach1
  • C/EBPalpha
  • Cdc5
  • Evi-1
  • IRF-2
  • Meis-1a
  • Meis-1b
  • S8
  • Sox9
  • SRY

Genomic Locations for LOC643802 Gene

Genomic Locations for LOC643802 Gene
chr16:53,364,982-53,373,083
(GRCh38/hg38)
Size:
8,102 bases
Orientation:
Minus strand
chr16:53,398,894-53,406,995
(GRCh37/hg19)
Size:
8,102 bases
Orientation:
Minus strand

Genomic View for LOC643802 Gene

Genes around LOC643802 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC643802 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643802 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643802 Gene

Proteins for LOC643802 Gene

Post-translational modifications for LOC643802 Gene

No Post-translational modifications

Other Protein References for LOC643802 Gene

No data available for DME Specific Peptides for LOC643802 Gene

Domains & Families for LOC643802 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643802 Gene

Function for LOC643802 Gene

Phenotypes From GWAS Catalog for LOC643802 Gene

Phenotypes for LOC643802 Gene

GenomeRNAi human phenotypes for LOC643802:
genes like me logo Genes that share phenotypes with LOC643802: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643802 Gene

Localization for LOC643802 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643802 Gene

Pathways & Interactions for LOC643802 Gene

PathCards logo

SuperPathways for LOC643802 Gene

genes like me logo Genes that share pathways with LOC643802: view

Pathways by source for LOC643802 Gene

1 KEGG pathway for LOC643802 Gene

Interacting Proteins for LOC643802 Gene

;

Gene Ontology (GO) - Biological Process for LOC643802 Gene

None

No data available for SIGNOR curated interactions for LOC643802 Gene

Drugs & Compounds for LOC643802 Gene

No Compound Related Data Available

Transcripts for LOC643802 Gene

mRNA/cDNA for LOC643802 Gene

2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643802 Gene

No ASD Table

Relevant External Links for LOC643802 Gene

GeneLoc Exon Structure for
LOC643802

Expression for LOC643802 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC643802 Gene

mRNA differential expression in normal tissues according to GTEx for LOC643802 Gene

This gene is overexpressed in Whole Blood (x41.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC643802

SOURCE GeneReport for Unigene cluster for LOC643802 Gene:

Hs.451336
genes like me logo Genes that share expression patterns with LOC643802: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643802 Gene

Orthologs for LOC643802 Gene

Evolution for LOC643802 Gene

ENSEMBL:
Gene Tree for LOC643802 (if available)
TreeFam:
Gene Tree for LOC643802 (if available)

No data available for Orthologs for LOC643802 Gene

Paralogs for LOC643802 Gene

No data available for Paralogs for LOC643802 Gene

Variants for LOC643802 Gene

Additional dbSNP identifiers (rs#s) for LOC643802 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC643802 Gene

Variant ID Type Subtype PubMed ID
nsv457489 CNV loss 19166990
nsv572618 CNV loss 21841781
nsv974816 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC643802 Gene

Disorders for LOC643802 Gene

No disorders were found for LOC643802 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643802 Gene

Publications for LOC643802 Gene

No publications were found for LOC643802 Gene.

No data available for Mastermind for LOC643802 Gene

Products for LOC643802 Gene

Sources for LOC643802 Gene