Aliases for LOC643709 Gene

Aliases for LOC643709 Gene

  • Macrophage Expressed 1 Pseudogene 3
  • Macrophage Expressed 1 (MPEG1) Pseudogene 5
  • AP002358.2 5

External Ids for LOC643709 Gene

Previous GeneCards Identifiers for LOC643709 Gene

  • GC11M058811
  • GC11M059054

Summaries for LOC643709 Gene

GeneCards Summary for LOC643709 Gene

LOC643709 (Macrophage Expressed 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC643709 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643709 Gene

Genomics for LOC643709 Gene

GeneHancer (GH) Regulatory Elements for LOC643709 Gene

Promoters and enhancers for LOC643709 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J059289 Enhancer 0.7 FANTOM5 dbSUPER 750.6 -0.3 -338 0.6 SP1 RXRA YY1 HNF4A MAX LOC643709 RN7SL435P RF00017-922 lnc-MPEG1-7 OR5A2 GLYATL1 OR5AN1 OR4D6 OSBP DTX4
GH11J059288 Promoter 0.6 Ensembl 750.6 +0.6 585 1 ZSCAN29 CREB1 YY1 LOC643709 OR5A2 OR5AN1 OR4D6 SLC25A47P1
GH11J059287 Enhancer 0.3 Ensembl 750.6 +1.9 1885 0.8 NFE2 MAFG LOC643709 OR5A2 OR5AN1 OR4D6 SLC25A47P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643709 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC643709 Gene

Genomic Locations for LOC643709 Gene
chr11:59,287,339-59,289,486
(GRCh38/hg38)
Size:
2,148 bases
Orientation:
Minus strand
chr11:59,054,812-59,056,959
(GRCh37/hg19)
Size:
2,148 bases
Orientation:
Minus strand

Genomic View for LOC643709 Gene

Genes around LOC643709 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC643709 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643709 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643709 Gene

Proteins for LOC643709 Gene

Post-translational modifications for LOC643709 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC643709 Gene

Domains & Families for LOC643709 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643709 Gene

Function for LOC643709 Gene

Phenotypes for LOC643709 Gene

GenomeRNAi human phenotypes for LOC643709:
genes like me logo Genes that share phenotypes with LOC643709: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643709 Gene

Localization for LOC643709 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643709 Gene

Pathways & Interactions for LOC643709 Gene

PathCards logo

SuperPathways for LOC643709 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC643709 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC643709 Gene

Drugs & Compounds for LOC643709 Gene

No Compound Related Data Available

Transcripts for LOC643709 Gene

mRNA/cDNA for LOC643709 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643709 Gene

No ASD Table

Relevant External Links for LOC643709 Gene

GeneLoc Exon Structure for
LOC643709

Expression for LOC643709 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC643709 Gene

mRNA differential expression in normal tissues according to GTEx for LOC643709 Gene

This gene is overexpressed in Liver (x49.7).
genes like me logo Genes that share expression patterns with LOC643709: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643709 Gene

Orthologs for LOC643709 Gene

Evolution for LOC643709 Gene

ENSEMBL:
Gene Tree for LOC643709 (if available)
TreeFam:
Gene Tree for LOC643709 (if available)

No data available for Orthologs for LOC643709 Gene

Paralogs for LOC643709 Gene

No data available for Paralogs for LOC643709 Gene

Variants for LOC643709 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC643709 Gene

Disorders for LOC643709 Gene

No disorders were found for LOC643709 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643709 Gene

Publications for LOC643709 Gene

No publications were found for LOC643709 Gene.

No data available for External Links for LOC643709 Gene

Products for LOC643709 Gene

Sources for LOC643709 Gene