Aliases for LOC643454 Gene

Aliases for LOC643454 Gene

  • Adaptor Related Protein Complex 3 Sigma 1 Subunit Pseudogene 3

External Ids for LOC643454 Gene

Previous GeneCards Identifiers for LOC643454 Gene

  • GC01M212722
  • GC01M214655

Summaries for LOC643454 Gene

GeneCards Summary for LOC643454 Gene

LOC643454 (Adaptor Related Protein Complex 3 Sigma 1 Subunit Pseudogene) is a Pseudogene.

Additional gene information for LOC643454 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643454 Gene

Genomics for LOC643454 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC643454 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J214483 Promoter/Enhancer 0.5 Ensembl dbSUPER 600.7 +0.1 78 0.4 ENSG00000213036 LOC643454 lnc-USH2A-4 PTPN14 lnc-PTPN14-4 SMYD2
GH01J214482 Promoter/Enhancer 0.5 EPDnew dbSUPER 600.7 +0.7 690 0.1 PTPN14 ENSG00000213036 LOC643454 lnc-USH2A-4 HE856199 lnc-PTPN14-4 SMYD2
GH01J214502 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -21.6 -21621 6.2 GATAD2A ZNF629 FOXA1 ZIC2 TCF12 CTCF ZNF600 ZNF561 SOX13 ETS1 PTPN14 RF00994-090 LOC643454 lnc-PTPN14-4 SMYD2
GH01J214491 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -11.5 -11522 7.2 CTCF SCRT2 CEBPB JUN SCRT1 JUND FOSL2 USF2 PRDM6 TRIM28 PTPN14 KCNK2 RF00994-090 LOC643454 lnc-PTPN14-4 SMYD2
GH01J214487 Enhancer 0.4 Ensembl dbSUPER 0.7 -4.2 -4222 1.4 ZNF524 ABHD17AP3 LOC643454 RF00994-090 PTPN14 lnc-PTPN14-4 SMYD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643454 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC643454 Gene

Genomic Locations for LOC643454 Gene
chr1:214,482,219-214,483,479
(GRCh38/hg38)
Size:
1,261 bases
Orientation:
Minus strand
chr1:214,655,562-214,656,832
(GRCh37/hg19)
Size:
1,271 bases
Orientation:
Minus strand

Genomic View for LOC643454 Gene

Genes around LOC643454 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC643454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643454 Gene

Proteins for LOC643454 Gene

Post-translational modifications for LOC643454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC643454 Gene

Domains & Families for LOC643454 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643454 Gene

Function for LOC643454 Gene

Phenotypes From GWAS Catalog for LOC643454 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643454 Gene

Localization for LOC643454 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643454 Gene

Pathways & Interactions for LOC643454 Gene

PathCards logo

SuperPathways for LOC643454 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC643454 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC643454 Gene

Drugs & Compounds for LOC643454 Gene

No Compound Related Data Available

Transcripts for LOC643454 Gene

mRNA/cDNA for LOC643454 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643454 Gene

No ASD Table

Relevant External Links for LOC643454 Gene

GeneLoc Exon Structure for
LOC643454

Expression for LOC643454 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC643454 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC643454

SOURCE GeneReport for Unigene cluster for LOC643454 Gene:

Hs.662086
genes like me logo Genes that share expression patterns with LOC643454: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643454 Gene

Orthologs for LOC643454 Gene

No data available for Orthologs and Evolution for LOC643454 Gene

Paralogs for LOC643454 Gene

No data available for Paralogs for LOC643454 Gene

Variants for LOC643454 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC643454 Gene

Disorders for LOC643454 Gene

No disorders were found for LOC643454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643454 Gene

Publications for LOC643454 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC643454 Gene

Products for LOC643454 Gene

Sources for LOC643454 Gene