Aliases for LOC643441 Gene

Subcategory (RNA class) for LOC643441 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC643441 Gene

  • Uncharacterized LOC643441 3
  • NONHSAG002467.2 91
  • HSALNG0006170 164
  • Lnc-SLC16A1-6 165

External Ids for LOC643441 Gene

Previous GeneCards Identifiers for LOC643441 Gene

  • GC01M113541
  • GC01U902484
  • GC01M113741

Summaries for LOC643441 Gene

GeneCards Summary for LOC643441 Gene

LOC643441 (Uncharacterized LOC643441) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC643441 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643441 Gene

Genomics for LOC643441 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC643441 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J113205 Enhancer 0.7 Ensembl ENCODE 600.7 -0.3 -284 1.9 FOXA1 PKNOX1 GTF2F1 CEBPA USF1 ZNF335 STAT1 CEBPB CEBPG CBFA2T3 LOC643441 RPS15P1 piR-38352-028 LRIG2 MAGI3
GH01J113208 Enhancer 1 Ensembl ENCODE 0.7 -3.8 -3847 3.8 IKZF1 JUND FOXA1 MTA2 PHF21A ZIC2 PKNOX1 MTA1 HDAC1 SOX6 RPS15P1 LRIG2-DT LOC643441 piR-38352-028 LRIG2 MAGI3
GH01J113216 Enhancer 1.1 Ensembl ENCODE 0.4 -12.0 -12034 4 GATAD2A CTCF IKZF1 ZNF7 ZIC2 PKNOX1 RXRB MTA1 IRF2 DPF2 MAGI3 LRIG2-DT LOC643441 piR-38352-028 LRIG2
GH01J113201 Enhancer 0.5 Ensembl 0.7 +4.0 3953 1 STAT1 PRDM6 ZNF362 CEBPB ZNF384 ZNF680 piR-51819-003 RPS15P1 LOC643441 LRIG2 MAGI3
GH01J113199 Enhancer 0.7 Ensembl ENCODE 0.4 +5.6 5649 2.2 TEAD4 FOXA1 ZBTB17 NFIC STAT1 NFIB FEZF1 PRDM6 NRF1 ZNF548 RPS15P1 LRIG2 ENSG00000232499 SLC16A1-AS1 RSBN1 ST7L piR-51819-003 LOC643441 MAGI3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643441 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC643441 Gene

Genomic Locations for LOC643441 Gene
chr1:113,196,781-113,206,253
(GRCh38/hg38)
Size:
9,473 bases
Orientation:
Minus strand
chr1:113,739,403-113,748,875
(GRCh37/hg19)
Size:
9,473 bases
Orientation:
Minus strand

Genomic View for LOC643441 Gene

Genes around LOC643441 on UCSC Golden Path with GeneCards custom track
LOC643441 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC643441 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643441 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643441 Gene

Proteins for LOC643441 Gene

Post-translational modifications for LOC643441 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC643441 Gene

Domains & Families for LOC643441 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643441 Gene

Function for LOC643441 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643441 Gene

Localization for LOC643441 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643441 Gene

Pathways & Interactions for LOC643441 Gene

PathCards logo

SuperPathways for LOC643441 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC643441 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC643441 Gene

Drugs & Compounds for LOC643441 Gene

No Compound Related Data Available

Transcripts for LOC643441 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC643441 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A6CD_9606 lncRNA 2171 1

RefSeq: NR_038846,

URS00008C3978_9606 lncRNA 391 3

LncBook: HSALNT0012928,

LNCipedia: lnc-SLC16A1-6:2,

NONCODE: NONHSAT005322.2,

URS00008B4922_9606 lncRNA 2171 2

LNCipedia: lnc-SLC16A1-6:1,

NONCODE: NONHSAT005321.2,

URS0000D5D9BB_9606 lncRNA 2172 1

LNCipedia: lnc-SLC16A1-6:3,

LOC643441 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC643441 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643441 Gene

No ASD Table

Relevant External Links for LOC643441 Gene

GeneLoc Exon Structure for
LOC643441

Expression for LOC643441 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC643441

SOURCE GeneReport for Unigene cluster for LOC643441 Gene:

Hs.124895
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643441 Gene

Orthologs for LOC643441 Gene

No data available for Orthologs and Evolution for LOC643441 Gene

Paralogs for LOC643441 Gene

No data available for Paralogs for LOC643441 Gene

Variants for LOC643441 Gene

Additional dbSNP identifiers (rs#s) for LOC643441 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC643441 Gene

Variant ID Type Subtype PubMed ID
esv24626 CNV loss 19812545
esv3587231 CNV loss 21293372
nsv2465 CNV deletion 18451855
nsv946150 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC643441 Gene

Disorders for LOC643441 Gene

No disorders were found for LOC643441 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643441 Gene

Publications for LOC643441 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC643441 Gene

Products for LOC643441 Gene

Sources for LOC643441 Gene