Aliases for LOC643387 Gene

Aliases for LOC643387 Gene

  • TAR DNA Binding Protein Pseudogene 3

External Ids for LOC643387 Gene

Previous GeneCards Identifiers for LOC643387 Gene

  • GC02P238805
  • GC02P239141
  • GC02P239148

Summaries for LOC643387 Gene

GeneCards Summary for LOC643387 Gene

LOC643387 (TAR DNA Binding Protein Pseudogene) is a Pseudogene.

Additional gene information for LOC643387 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643387 Gene

Genomics for LOC643387 Gene

GeneHancer (GH) Regulatory Elements for LOC643387 Gene

Promoters and enhancers for LOC643387 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J238231 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 500.7 -0.3 -285 1.2 SIX5 TARDBP MYC CTBP1 HDAC2 POLR2A EZH2 DEAF1 MBD2 RBM14 ENSG00000225057 LINC02610 LOC643387 piR-39398 piR-39491 piR-48221-002 ILKAP ESPNL
GH02J238232 Promoter 0.3 Ensembl 500.7 +0.7 715 0.4 ENSG00000225057 LOC643387 LINC02610 piR-39398 piR-39491 piR-48221-002 ERFE HES6
GH02J238234 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.0 2995 1 ZNF217 POLR2G SP1 PHF8 SIX5 ZFX ZBTB7A SKI MYC ZNF341 ENSG00000225057 ERFE LOC643387 piR-48221-002 HES6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643387 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC643387 gene promoter:
  • AML1a
  • C/EBPalpha
  • Egr-4
  • MyoD
  • NF-kappaB1
  • TGIF

Genomic Locations for LOC643387 Gene

Genomic Locations for LOC643387 Gene
chr2:238,231,686-238,234,345
(GRCh38/hg38)
Size:
2,660 bases
Orientation:
Plus strand
chr2:239,140,327-239,142,986
(GRCh37/hg19)
Size:
2,660 bases
Orientation:
Plus strand

Genomic View for LOC643387 Gene

Genes around LOC643387 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC643387 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643387 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643387 Gene

Proteins for LOC643387 Gene

Post-translational modifications for LOC643387 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC643387 Gene

Domains & Families for LOC643387 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643387 Gene

Function for LOC643387 Gene

Phenotypes From GWAS Catalog for LOC643387 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643387 Gene

Localization for LOC643387 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643387 Gene

Pathways & Interactions for LOC643387 Gene

PathCards logo

SuperPathways for LOC643387 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC643387 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC643387 Gene

Drugs & Compounds for LOC643387 Gene

No Compound Related Data Available

Transcripts for LOC643387 Gene

mRNA/cDNA for LOC643387 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643387 Gene

No ASD Table

Relevant External Links for LOC643387 Gene

GeneLoc Exon Structure for
LOC643387

Expression for LOC643387 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC643387 Gene

mRNA expression in normal human tissues for LOC643387 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC643387

SOURCE GeneReport for Unigene cluster for LOC643387 Gene:

Hs.598359
genes like me logo Genes that share expression patterns with LOC643387: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643387 Gene

Orthologs for LOC643387 Gene

No data available for Orthologs and Evolution for LOC643387 Gene

Paralogs for LOC643387 Gene

No data available for Paralogs for LOC643387 Gene

Variants for LOC643387 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC643387 Gene

Variant ID Type Subtype PubMed ID
nsv1000252 CNV loss 25217958
nsv584761 CNV gain 21841781
nsv961941 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC643387 Gene

Disorders for LOC643387 Gene

No disorders were found for LOC643387 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643387 Gene

Publications for LOC643387 Gene

  1. [Parkinson disease and amyotrophic lateral sclerosis. Tauopathies, TDP-43 and SOD mutations]. (PMID: 18808763) Le Forestier N … Meininger V (Revue neurologique 2009) 3 54
  2. [Recent progress in ALS research: ALS and TDP-43]. (PMID: 19048944) Kuzuhara S (Rinsho shinkeigaku = Clinical neurology 2008) 3 54
  3. Motor neuron disease and frontotemporal lobar degeneration: a tale of two disorders linked to TDP-43. (PMID: 18097163) Elman LB … Grossman M (Neuro-Signals 2008) 3 54
  4. TAR-DNA binding protein 43 in Pick disease. (PMID: 18091558) Freeman SH … Frosch MP (Journal of neuropathology and experimental neurology 2008) 3 54
  5. TDP-43 in familial and sporadic frontotemporal lobar degeneration with ubiquitin inclusions. (PMID: 17591968) Cairns NJ … Mackenzie IR (The American journal of pathology 2007) 3 54

No data available for Mastermind for LOC643387 Gene

Products for LOC643387 Gene

Sources for LOC643387 Gene