Aliases for LOC643201 Gene

Aliases for LOC643201 Gene

  • Centrosomal Protein 192kDa Pseudogene 3

External Ids for LOC643201 Gene

Previous GeneCards Identifiers for LOC643201 Gene

  • GC05M175534
  • GC05M175570

Summaries for LOC643201 Gene

GeneCards Summary for LOC643201 Gene

LOC643201 (Centrosomal Protein 192kDa Pseudogene) is a Pseudogene.

Additional gene information for LOC643201 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC643201 Gene

Genomics for LOC643201 Gene

GeneHancer (GH) Regulatory Elements for LOC643201 Gene

Promoters and enhancers for LOC643201 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC643201 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC643201 gene promoter:
  • CREB
  • deltaCREB
  • FOXJ2
  • FOXJ2 (long isoform)
  • GATA-1
  • GATA-2
  • MIF-1
  • NF-1
  • NF-1/L
  • RFX1

Genomic Locations for LOC643201 Gene

Genomic Locations for LOC643201 Gene
chr5:176,143,085-176,199,295
(GRCh38/hg38)
Size:
56,211 bases
Orientation:
Minus strand

Genomic View for LOC643201 Gene

Genes around LOC643201 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC643201 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC643201 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC643201 Gene

Proteins for LOC643201 Gene

Post-translational modifications for LOC643201 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC643201 Gene

Domains & Families for LOC643201 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC643201 Gene

Function for LOC643201 Gene

Phenotypes From GWAS Catalog for LOC643201 Gene

Phenotypes for LOC643201 Gene

genes like me logo Genes that share phenotypes with LOC643201: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC643201 Gene

Localization for LOC643201 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC643201 Gene

Pathways & Interactions for LOC643201 Gene

PathCards logo

SuperPathways for LOC643201 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC643201 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC643201 Gene

Drugs & Compounds for LOC643201 Gene

No Compound Related Data Available

Transcripts for LOC643201 Gene

mRNA/cDNA for LOC643201 Gene

(3) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC643201 Gene

No ASD Table

Relevant External Links for LOC643201 Gene

GeneLoc Exon Structure for
LOC643201

Expression for LOC643201 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC643201 Gene

SOURCE GeneReport for Unigene cluster for LOC643201 Gene:

Hs.390285
genes like me logo Genes that share expression patterns with LOC643201: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC643201 Gene

Orthologs for LOC643201 Gene

No data available for Orthologs and Evolution for LOC643201 Gene

Paralogs for LOC643201 Gene

No data available for Paralogs for LOC643201 Gene

Variants for LOC643201 Gene

Sequence variations from dbSNP and Humsavar for LOC643201 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000072311 -- 176,152,925(-) A/C/G intron_variant
rs1000113793 -- 176,155,594(-) T/C non_coding_transcript_variant
rs1000166184 -- 176,168,194(-) C/T intron_variant
rs1000191578 -- 176,190,173(-) C/A intron_variant
rs1000221501 -- 176,161,305(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC643201 Gene

Variant ID Type Subtype PubMed ID
dgv10179n54 CNV gain 21841781
dgv1669e212 CNV gain 25503493
dgv209e55 CNV gain 17911159
dgv5832n100 CNV gain 25217958
dgv5833n100 CNV gain 25217958
dgv5834n100 CNV gain 25217958
dgv5835n100 CNV gain+loss 25217958
dgv5836n100 CNV loss 25217958
dgv5837n100 CNV loss 25217958
dgv5838n100 CNV gain 25217958
dgv5839n100 CNV gain 25217958
dgv5840n100 CNV gain 25217958
dgv5841n100 CNV gain 25217958
dgv5842n100 CNV gain 25217958
dgv5843n100 CNV gain 25217958
dgv730n27 CNV gain 19166990
dgv731n27 CNV gain 19166990
esv2421778 CNV duplication 20811451
esv2759395 CNV gain 17122850
esv2760985 CNV gain+loss 21179565
esv2763523 CNV gain 21179565
esv29909 CNV gain+loss 19812545
esv33221 CNV loss 17666407
esv3450569 CNV duplication 20981092
esv34563 CNV gain 17911159
esv3567052 CNV deletion 23714750
esv3570567 CNV loss 25503493
esv3575900 CNV gain 25503493
esv3607664 CNV loss 21293372
esv3607665 CNV gain 21293372
esv3607666 CNV loss 21293372
esv3607667 CNV gain 21293372
esv3890768 CNV gain+loss 25118596
nsv1015753 CNV gain+loss 25217958
nsv1017719 CNV gain 25217958
nsv1018167 CNV gain+loss 25217958
nsv1022941 CNV gain 25217958
nsv1023853 CNV gain 25217958
nsv10781 CNV gain 18304495
nsv10782 CNV gain+loss 18304495
nsv428131 CNV gain 18775914
nsv433374 CNV gain 18776910
nsv441977 CNV gain 18776908
nsv462548 CNV gain 19166990
nsv462549 CNV gain 19166990
nsv516952 CNV gain+loss 19592680
nsv600339 CNV gain 21841781
nsv600340 CNV gain 21841781
nsv600341 CNV gain 21841781
nsv818393 CNV gain 17921354
nsv830557 CNV loss 17160897
nsv950720 CNV deletion 24416366
nsv980760 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC643201 Gene

Disorders for LOC643201 Gene

No disorders were found for LOC643201 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC643201 Gene

Publications for LOC643201 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC643201 Gene

Products for LOC643201 Gene

Sources for LOC643201 Gene