Aliases for LOC642943 Gene

Aliases for LOC642943 Gene

  • SPATA31 Subfamily A Pseudogene 3
  • Family With Sequence Similarity 75, Member A1 Pseudogene 3
  • SPATA31 Subfamily A, Member 4 Pseudogene 3

External Ids for LOC642943 Gene

Previous GeneCards Identifiers for LOC642943 Gene

  • GC09P094684
  • GC09P095645
  • GC09P065321

Summaries for LOC642943 Gene

GeneCards Summary for LOC642943 Gene

LOC642943 (SPATA31 Subfamily A Pseudogene) is a Pseudogene.

Additional gene information for LOC642943 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642943 Gene

Genomics for LOC642943 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC642943 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J092882 Enhancer 0.6 Ensembl ENCODE 600.7 +0.9 878 2.5 CTCF IKZF1 DACH1 ENSG00000226668 LOC642943 piR-32828 lnc-FGD3-3 piR-41238-008 FGD3 ZNF484 CENPP RF00017-7715 ENSG00000288271
GH09J092886 Enhancer 0.5 Ensembl 0.4 +5.2 5234 2.8 SCRT2 RFX1 ZBTB48 PRDM4 RFX5 HLF piR-42638-002 piR-46636 piR-41281-003 FGD3 ZNF484 ENSG00000226668 LOC642943 lnc-FGD3-3 RF00017-7715 ENSG00000288271
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642943 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC642943 gene promoter:
  • AREB6
  • GATA-1
  • POU3F1
  • RORalpha2
  • TGIF
  • USF-1
  • USF1

Genomic Locations for LOC642943 Gene

Genomic Locations for LOC642943 Gene
chr9:92,882,567-92,889,555
(GRCh38/hg38)
Size:
6,989 bases
Orientation:
Plus strand
chr9:95,644,856-95,650,717
(GRCh37/hg19)
Size:
5,862 bases
Orientation:
Plus strand

Genomic View for LOC642943 Gene

Genes around LOC642943 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642943 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642943 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642943 Gene

Proteins for LOC642943 Gene

Post-translational modifications for LOC642943 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642943 Gene

Domains & Families for LOC642943 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642943 Gene

Function for LOC642943 Gene

Phenotypes From GWAS Catalog for LOC642943 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642943 Gene

Localization for LOC642943 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642943 Gene

Pathways & Interactions for LOC642943 Gene

PathCards logo

SuperPathways for LOC642943 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642943 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642943 Gene

Drugs & Compounds for LOC642943 Gene

No Compound Related Data Available

Transcripts for LOC642943 Gene

mRNA/cDNA for LOC642943 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642943 Gene

No ASD Table

Relevant External Links for LOC642943 Gene

GeneLoc Exon Structure for
LOC642943

Expression for LOC642943 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642943 Gene

genes like me logo Genes that share expression patterns with LOC642943: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642943 Gene

Orthologs for LOC642943 Gene

No data available for Orthologs and Evolution for LOC642943 Gene

Paralogs for LOC642943 Gene

No data available for Paralogs for LOC642943 Gene

Variants for LOC642943 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC642943 Gene

Variant ID Type Subtype PubMed ID
nsv831654 CNV gain 17160897
nsv972781 CNV duplication 23825009
nsv973756 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC642943 Gene

Disorders for LOC642943 Gene

No disorders were found for LOC642943 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642943 Gene

Publications for LOC642943 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3

No data available for Mastermind for LOC642943 Gene

Products for LOC642943 Gene

Sources for LOC642943 Gene