Aliases for LOC642897 Gene

Aliases for LOC642897 Gene

  • N-6 Adenine-Specific DNA Methyltransferase 1 (Putative) Pseudogene 3

External Ids for LOC642897 Gene

Previous GeneCards Identifiers for LOC642897 Gene

  • GC11M092983
  • GC11M093342
  • GC11M093610
  • GC11M093893
  • GC11M094027
  • GC11M094041
  • GC11M094219
  • GC11M093613
  • GC11M093722
  • GC11M093716

Summaries for LOC642897 Gene

GeneCards Summary for LOC642897 Gene

LOC642897 (N-6 Adenine-Specific DNA Methyltransferase 1 (Putative) Pseudogene) is a Pseudogene.

Additional gene information for LOC642897 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642897 Gene

Genomics for LOC642897 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC642897 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J093611 Enhancer 0.6 Ensembl ENCODE 600.7 -1.6 -1647 2.1 REST SP1 HNF4A RXRA HNF4G ENSG00000255515 LOC642897 lnc-SMCO4-2 C11orf54 SMCO4 TAF1D CEP295
GH11J093608 Enhancer 0.7 Ensembl ENCODE 0.7 +2.1 2113 3 PKNOX1 HMBOX1 ZNF157 FOXA2 FOSL1 ZNF189 SPI1 C11orf54 TAF1D ENSG00000255515 LOC642897 lnc-SMCO4-2 ENSG00000278953 SMCO4 CEP295
GH11J093622 Enhancer 0.6 ENCODE 0.4 -12.8 -12776 0.6 FOXA1 PRDM1 IKZF2 RELB RUNX3 FOXA2 BCLAF1 IKZF1 MTA2 MAX C11orf54 LOC642897 CEP295 SMCO4
GH11J093654 Enhancer 0.8 Ensembl ENCODE 0.3 -43.9 -43938 4.9 CTCF FOXA1 RAD21 TRIM22 SCRT2 EGR1 RUNX3 SMC3 RFX5 GATA3 C11orf54 CEP295 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18 SNORA8
GH11J093623 Enhancer 0.5 Ensembl 0.4 -12.0 -11987 0.4 REST RAD21 CTCF SMC3 GATA3 CC2D1A SMCO4 LOC642897 CEP295
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642897 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC642897 Gene

Genomic Locations for LOC642897 Gene
chr11:93,609,432-93,610,414
(GRCh38/hg38)
Size:
983 bases
Orientation:
Minus strand
chr11:93,342,926-93,343,561
(GRCh37/hg19)
Size:
636 bases
Orientation:
Minus strand

Genomic View for LOC642897 Gene

Genes around LOC642897 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642897 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642897 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642897 Gene

Proteins for LOC642897 Gene

Post-translational modifications for LOC642897 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642897 Gene

Domains & Families for LOC642897 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642897 Gene

Function for LOC642897 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642897 Gene

Localization for LOC642897 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642897 Gene

Pathways & Interactions for LOC642897 Gene

PathCards logo

SuperPathways for LOC642897 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642897 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642897 Gene

Drugs & Compounds for LOC642897 Gene

No Compound Related Data Available

Transcripts for LOC642897 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642897 Gene

No ASD Table

Relevant External Links for LOC642897 Gene

GeneLoc Exon Structure for
LOC642897

No data available for mRNA/cDNA for LOC642897 Gene

Expression for LOC642897 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642897 Gene

genes like me logo Genes that share expression patterns with LOC642897: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642897 Gene

Orthologs for LOC642897 Gene

No data available for Orthologs and Evolution for LOC642897 Gene

Paralogs for LOC642897 Gene

No data available for Paralogs for LOC642897 Gene

Variants for LOC642897 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642897 Gene

Disorders for LOC642897 Gene

No disorders were found for LOC642897 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642897 Gene

Publications for LOC642897 Gene

No publications were found for LOC642897 Gene.

No data available for Mastermind for LOC642897 Gene

Products for LOC642897 Gene

Sources for LOC642897 Gene