LOC642696 Gene (RNA Gene)

Uncharacterized LOC642696

GC16M012087
GIFtS:
5
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Aliases for LOC642696 Gene

Subcategory (RNA class) for LOC642696 Gene

ncRNA

Aliases for LOC642696 Gene

  • Uncharacterized LOC642696 3

External Ids for LOC642696 Gene

Previous GeneCards Identifiers for LOC642696 Gene

  • GC16M012086

Summaries for LOC642696 Gene

GeneCards Summary for LOC642696 Gene

LOC642696 (Uncharacterized LOC642696) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC642696 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642696 Gene

Genomics for LOC642696 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC642696 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J012089 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.0 997 1.5 ZBTB33 TEAD4 POLR2A JUND ZIC2 ZNF600 CTBP1 YY1 FOSL1 SPI1 ENSG00000175604 LOC642696 piR-57133-218 SNX29 CPPED1
GH16J012091 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 600.7 -1.6 -1619 2.2 CEBPA ZBTB44 CEBPB NFE2 ZNF316 MAFF MAFK ZNF205 MAFG CEBPG ENSG00000175604 LOC642696 SNX29 ENSG00000261293 CPPED1
GH16J012096 Enhancer 0.8 ENCODE dbSUPER 0.7 -4.5 -4470 0.3 CTCF RAD21 TRIM22 RUNX3 TCF7 ZNF444 SMC3 MBD1 ELF1 ZSCAN9 ENSG00000261293 LOC642696 SNX29 CPPED1
GH16J012088 Enhancer 0.6 ENCODE dbSUPER 0.7 +2.4 2350 0.2 RFX1 ZNF600 USF1 TFAP4 ENSG00000175604 LOC642696 piR-57133-218 SNX29 CPPED1
GH16J012094 Enhancer 0.3 dbSUPER 0.7 -3.9 -3918 0.5 CTCF ENSG00000261293 SNX29 LOC642696 CPPED1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642696 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC642696 Gene

Genomic Locations for LOC642696 Gene
chr16:12,087,529-12,090,669
(GRCh38/hg38)
Size:
3,141 bases
Orientation:
Minus strand

Genomic View for LOC642696 Gene

Genes around LOC642696 on UCSC Golden Path with GeneCards custom track
LOC642696 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC642696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642696 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC642696 Gene

Proteins for LOC642696 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC642696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642696 Gene

Domains & Families for LOC642696 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642696 Gene

Function for LOC642696 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC642696 Gene

Phenotypes for LOC642696 Gene

GenomeRNAi human phenotypes for LOC642696:
genes like me logo Genes that share phenotypes with LOC642696: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642696 Gene

Localization for LOC642696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642696 Gene

Pathways & Interactions for LOC642696 Gene

PathCards logo

SuperPathways for LOC642696 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642696 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642696 Gene

Drugs & Compounds for LOC642696 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC642696 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
LOC642696 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

mRNA/cDNA for LOC642696 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642696 Gene

No ASD Table

Relevant External Links for LOC642696 Gene

GeneLoc Exon Structure for
LOC642696

Expression for LOC642696 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642696 Gene

mRNA expression in normal human tissues for LOC642696 Gene
mRNA expression by GTEx for LOC642696 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC642696

genes like me logo Genes that share expression patterns with LOC642696: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642696 Gene

Orthologs for LOC642696 Gene

No data available for Orthologs and Evolution for LOC642696 Gene

Paralogs for LOC642696 Gene

No data available for Paralogs for LOC642696 Gene

Variants for LOC642696 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC642696 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642696 Gene

Disorders for LOC642696 Gene

No disorders were found for LOC642696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642696 Gene

Publications for LOC642696 Gene

  1. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng JS … Lai CQ (PloS one 2013) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC642696 Gene

Products for LOC642696 Gene

Sources for LOC642696 Gene