LOC642484 Gene (RNA Gene)

Uncharacterized LOC642484

GC18M056003
GIFtS:
8

Aliases for LOC642484 Gene

Subcategory (RNA class) for LOC642484 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LOC642484 Gene

  • Uncharacterized LOC642484 3
  • HSALNG0121712 169
  • NONHSAG023919 94
  • LINC01539 170

External Ids for LOC642484 Gene

Summaries for LOC642484 Gene

GeneCards Summary for LOC642484 Gene

LOC642484 (Uncharacterized LOC642484) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC642484 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642484 Gene

Genomics for LOC642484 Gene

GeneHancer (GH) Regulatory Elements for LOC642484 Gene

Promoters and enhancers for LOC642484 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056028 Enhancer 0.6 Ensembl 750.6 -0.8 -782 0.4 FOXA1 RAD21 SP1 FOXA2 JUND ATF3 YY1 ZBTB33 HNF4A REST LOC642484 ENSG00000206129 ENSG00000287248 LINC01905 LOC107985164
GH18J056026 Enhancer 0.2 Ensembl 750.6 +1.1 1118 1 ENSG00000287248 LOC642484 ENSG00000206129 LOC107985164
GH18J056019 Enhancer 0.4 Ensembl 0.4 +6.7 6718 5 PKNOX1 FOS JUN POLR2A ENSG00000206129 ENSG00000287248 LOC642484 piR-60885-051 LOC107985164
GH18J056003 Enhancer 0.4 Ensembl ENCODE 0.3 +24.4 24379 0.9 EZH2 LINC01416 piR-60885-051 LOC642484 LOC107985164 ENSG00000206129
GH18J056009 Enhancer 0.2 Ensembl 0.4 +18.1 18118 0.6 ENSG00000206129 piR-60885-051 LINC01416 LOC642484 LOC107985164
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642484 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC642484 Gene

Genomic Locations for LOC642484 Gene
chr18:56,003,290-56,027,819
(GRCh38/hg38)
Size:
24,530 bases
Orientation:
Minus strand

Genomic View for LOC642484 Gene

Genes around LOC642484 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642484 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC642484 Gene

Proteins for LOC642484 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC642484 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642484 Gene

Domains & Families for LOC642484 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642484 Gene

Function for LOC642484 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC642484 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC642484

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642484 Gene

Localization for LOC642484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642484 Gene

Pathways & Interactions for LOC642484 Gene

PathCards logo

SuperPathways for LOC642484 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642484 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC642484 Gene

Drugs & Compounds for LOC642484 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC642484 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC642484 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) NONCODE transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC642484

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642484 Gene

No ASD Table

Relevant External Links for LOC642484 Gene

GeneLoc Exon Structure for
LOC642484

Expression for LOC642484 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC642484 Gene

mRNA expression in normal human tissues for LOC642484 Gene
mRNA expression by GTEx for LOC642484 Gene
genes like me logo Genes that share expression patterns with LOC642484: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642484 Gene

Orthologs for LOC642484 Gene

No data available for Orthologs and Evolution for LOC642484 Gene

Paralogs for LOC642484 Gene

No data available for Paralogs for LOC642484 Gene

Variants for LOC642484 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC642484 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000028242 -- 56,083,754(-) C/T intron_variant
rs1000042862 -- 56,095,825(-) T/C intron_variant
rs1000043505 -- 56,051,182(-) A/G intron_variant
rs1000063709 -- 56,066,196(-) TTTTTTTT/TTTTTTT/TTTTTTTTT intron_variant
rs1000102040 -- 56,168,700(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642484 Gene

Disorders for LOC642484 Gene

No disorders were found for LOC642484 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642484 Gene

Publications for LOC642484 Gene

  1. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 3 56

No data available for External Links for LOC642484 Gene

Products for LOC642484 Gene

Sources for LOC642484 Gene