LOC642484 Gene (RNA Gene)

Uncharacterized LOC642484

GC18M056003
GIFtS:
11
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Aliases for LOC642484 Gene

Subcategory (RNA class) for LOC642484 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC642484 Gene

  • Uncharacterized LOC642484 3
  • Novel Transcript 5
  • NONHSAG023919.2 91
  • HSALNG0121712 164
  • AC006305.2 5
  • LINC01539 165

External Ids for LOC642484 Gene

Summaries for LOC642484 Gene

GeneCards Summary for LOC642484 Gene

LOC642484 (Uncharacterized LOC642484) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC642484 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642484 Gene

Genomics for LOC642484 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC642484 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056189 Enhancer 0.3 Ensembl 600.7 +2.0 1961 0.2 PKNOX1 NRF1 LOC642484 LOC105372132 WDR7 TCF4
GH18J056019 Enhancer 0.5 Ensembl 16 +170.2 170161 5 PKNOX1 JUND FOS SPI1 JUN POLR2A MEIS2 GABPB1 LOC642484 ENSG00000287248 piR-60885-051 LOC107985164 ENSG00000267327 TCF4 WDR7
GH18J055983 Enhancer 0.9 Ensembl ENCODE 6.5 +208.0 207961 1.4 TEAD4 IKZF1 JUND MTA2 PHF21A MTA1 HDAC1 SOX6 EP300 CTBP1 LOC642484 LINC01416 LOC107985164 piR-50399-013 ENSG00000267327 TCF4 WDR7
GH18J055988 Enhancer 0.7 Ensembl ENCODE 7.4 +202.0 201954 2.6 RFX1 PKNOX1 FOXJ2 CEBPB MEF2D NR2F2 CEBPG BHLHE40 JUN MEIS2 LOC642484 LINC01416 LOC107985164 piR-50399-013 ENSG00000267327 TCF4 WDR7
GH18J055997 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 5.3 +192.6 192599 3 EZH2 GABPA SP1 IKZF1 CTCF LOC107985164 LINC01416 LOC642484 piR-60885-051 ENSG00000267327 TCF4 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642484 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC642484 Gene

Genomic Locations for LOC642484 Gene
chr18:56,003,613-56,191,262
(GRCh38/hg38)
Size:
187,650 bases
Orientation:
Minus strand
chr18:53,670,844-53,858,493
(GRCh37/hg19)
Size:
187,650 bases
Orientation:
Minus strand

Genomic View for LOC642484 Gene

Genes around LOC642484 on UCSC Golden Path with GeneCards custom track
LOC642484 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC642484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642484 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC642484 Gene

Proteins for LOC642484 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC642484 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642484 Gene

Domains & Families for LOC642484 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642484 Gene

Function for LOC642484 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC642484 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC642484

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642484 Gene

Localization for LOC642484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642484 Gene

Pathways & Interactions for LOC642484 Gene

PathCards logo

SuperPathways for LOC642484 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642484 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642484 Gene

Drugs & Compounds for LOC642484 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC642484 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC642484 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000051A07F_9606 lncRNA 2558 4

RefSeq: NR_148972,

Ensembl: ENST00000382897 (view in UCSC) ,

LNCipedia: LINC01539:1,

NONCODE: NONHSAT059389.2,

URS000049C49C_9606 lncRNA 555 4

Ensembl: ENST00000589754 (view in UCSC) ,

LncBook: HSALNT0251583,

LNCipedia: LINC01539:18,

NONCODE: NONHSAT059393.2,

URS0000DB7163_9606 lncRNA 1805 1

Ensembl: ENST00000650203 (view in UCSC) ,

URS00008C2389_9606 lncRNA 1735 3

LncBook: HSALNT0251577,

LNCipedia: LINC01539:21,

NONCODE: NONHSAT059390.2,

URS00008B4A7B_9606 lncRNA 1329 3

LncBook: HSALNT0251604,

LNCipedia: LINC01539:8,

NONCODE: NONHSAT059402.2,

LOC642484 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC642484 Gene

1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC642484

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642484 Gene

No ASD Table

Relevant External Links for LOC642484 Gene

GeneLoc Exon Structure for
LOC642484

Expression for LOC642484 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642484 Gene

mRNA expression in normal human tissues for LOC642484 Gene
mRNA expression by GTEx for LOC642484 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC642484

genes like me logo Genes that share expression patterns with LOC642484: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642484 Gene

Orthologs for LOC642484 Gene

Evolution for LOC642484 Gene

ENSEMBL:
Gene Tree for LOC642484 (if available)
TreeFam:
Gene Tree for LOC642484 (if available)

No data available for Orthologs for LOC642484 Gene

Paralogs for LOC642484 Gene

No data available for Paralogs for LOC642484 Gene

Variants for LOC642484 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC642484 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642484 Gene

Disorders for LOC642484 Gene

Additional Disease Information for LOC642484

Open Targets Platform

No disorders were found for LOC642484 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC642484 Gene

Publications for LOC642484 Gene

  1. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 3

No data available for Mastermind for LOC642484 Gene

Products for LOC642484 Gene

Sources for LOC642484 Gene