LOC642484 Gene (RNA Gene)

Uncharacterized LOC642484

GC18M056003
GIFtS:
12
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Aliases for LOC642484 Gene

Data sources for LOC642484 Gene:

Subcategory (RNA class) for LOC642484 Gene

lncRNA

Aliases for LOC642484 Gene

External Ids for LOC642484 Gene

Summaries for LOC642484 Gene

GeneCards Summary for LOC642484 Gene

LOC642484 (Uncharacterized LOC642484) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC642484 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LOC642484 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642484 Gene

Genomics for LOC642484 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC642484 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J056019 Enhancer 0.5 Ensembl 16 +170.2 170161 5 JUND SPI1 MEIS2 GABPB1 PKNOX1 FOS LOC642484 ENSG00000287248 piR-60885-051 LOC107985164 TCF4 WDR7
GH18J055988 Enhancer 0.7 Ensembl ENCODE 7.4 +202.0 201954 2.6 RFX1 ZBTB40 BHLHE40 MEIS2 CEBPB IKZF1 FOXJ2 PKNOX1 MEF2D NR2F2 LOC642484 LINC01416 HSALNG0121710 LOC107985164 TCF4 WDR7
GH18J055997 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 5.3 +192.7 192687 3.2 GABPA ZNF316 SP1 IKZF1 CTCF EZH2 LINC01416 LOC642484 piR-60885-051 LOC107985164 TCF4 WDR7
GH18J056082 Enhancer 0.6 Ensembl ENCODE 6.4 +107.9 107861 4 CTCF RAD21 NR2F2 LOC642484 HSALNG0121713 ENSG00000267732 LINC01539 LINC01905 TCF4 WDR7
GH18J055900 Enhancer 0.8 VISTA UCNEbase Ensembl 4.3 +290.3 290314 1.3 EP300 LOC642484 LOC107985164 HSALNG0121711 LINC01416 TCF4 WDR7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642484 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC642484 Gene

Latest Assembly
chr18:56,003,612-56,191,262
(GRCh38/hg38)
Size:
187,651 bases
Orientation:
Minus strand

Previous Assembly
chr18:53,670,844-53,858,493
(GRCh37/hg19 by Entrez Gene)
Size:
187,650 bases
Orientation:
Minus strand

chr18:53,670,844-53,858,493
(GRCh37/hg19 by Ensembl)
Size:
187,650 bases
Orientation:
Minus strand

Genomic View for LOC642484 Gene

Genes around LOC642484 on UCSC Golden Path with GeneCards custom track
LOC642484 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC642484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642484 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC642484 Gene

Proteins for LOC642484 Gene

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Post-translational modifications for LOC642484 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642484 Gene

Domains & Families for LOC642484 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642484 Gene

Function for LOC642484 Gene

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  3. miRNA products for research
  4. Inhibitory RNAs for research
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  6. Cell Lines for research

Phenotypes From GWAS Catalog for LOC642484 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642484 Gene

Localization for LOC642484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642484 Gene

Pathways & Interactions for LOC642484 Gene

PathCards logo

SuperPathways for LOC642484 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642484 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642484 Gene

Drugs & Compounds for LOC642484 Gene

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No Compound Related Data Available

Transcripts for LOC642484 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC642484 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000051A07F_9606 lncRNA 2558 4

RefSeq: NR_148972,

Ensembl: ENST00000382897 (view in UCSC) ,

LNCipedia: LINC01539:1,

NONCODE: NONHSAT059389.2,

URS000049C49C_9606 lncRNA 558 4

Ensembl: ENST00000589754 (view in UCSC) ,

LncBook: HSALNT0251583,

LNCipedia: LINC01539:18,

NONCODE: NONHSAT059393.2,

URS0000DB7163_9606 lncRNA 1805 1

Ensembl: ENST00000650203 (view in UCSC) ,

URS00008C2389_9606 lncRNA 1735 3

LncBook: HSALNT0251577,

LNCipedia: LINC01539:21,

NONCODE: NONHSAT059390.2,

URS00008B4A7B_9606 lncRNA 1334 3

LncBook: HSALNT0251604,

LNCipedia: LINC01539:8,

NONCODE: NONHSAT059402.2,

LOC642484 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC642484 Gene

1 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC642484

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642484 Gene

No ASD Table

Relevant External Links for LOC642484 Gene

GeneLoc Exon Structure for
LOC642484

Expression for LOC642484 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642484 Gene

mRNA expression in normal human tissues for LOC642484 Gene
mRNA expression by GTEx for LOC642484 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC642484

genes like me logo Genes that share expression patterns with LOC642484: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642484 Gene

Orthologs for LOC642484 Gene

Evolution for LOC642484 Gene

ENSEMBL:
Gene Tree for LOC642484 (if available)
TreeFam:
Gene Tree for LOC642484 (if available)

No data available for Orthologs for LOC642484 Gene

Paralogs for LOC642484 Gene

No data available for Paralogs for LOC642484 Gene

Variants for LOC642484 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC642484 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642484 Gene

Disorders for LOC642484 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC642484 Gene - From: LNC

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • osler hemorrhagic telangiectasia syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC642484

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with LOC642484: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC642484 Gene

Publications for LOC642484 Gene

  1. Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia. (PMID: 24603890) Tørring PM … Brusgaard K (PloS one 2014) 74
  2. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 3

No data available for Mastermind for LOC642484 Gene

Products for LOC642484 Gene

Sources for LOC642484 Gene