Aliases for LOC642381 Gene

Aliases for LOC642381 Gene

  • Speckle Type BTB/POZ Protein Like Pseudogene 3
  • Speckle-Type POZ Protein-Like Pseudogene 3

External Ids for LOC642381 Gene

Previous GeneCards Identifiers for LOC642381 Gene

  • GC04M069897
  • GC04M069861

Summaries for LOC642381 Gene

GeneCards Summary for LOC642381 Gene

LOC642381 (Speckle Type BTB/POZ Protein Like Pseudogene) is a Pseudogene.

Additional gene information for LOC642381 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642381 Gene

Genomics for LOC642381 Gene

GeneHancer (GH) Regulatory Elements for LOC642381 Gene

Promoters and enhancers for LOC642381 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J069019 Enhancer 0.8 Ensembl 0.4 -22.2 -22190 1.4 TCF12 POLR2G TCF7 FOXA1 SKI TEAD1 ZKSCAN8 FOXA2 KLF9 KAT7 UGT2B27P UGT2B28 ENSG00000250696 UGT2B7 ENSG00000251529 LOC642381
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642381 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC642381 Gene

Genomic Locations for LOC642381 Gene
chr4:68,995,339-68,997,711
(GRCh38/hg38)
Size:
2,373 bases
Orientation:
Minus strand
chr4:69,861,057-69,863,429
(GRCh37/hg19)
Size:
2,373 bases
Orientation:
Minus strand

Genomic View for LOC642381 Gene

Genes around LOC642381 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642381 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642381 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642381 Gene

Proteins for LOC642381 Gene

Post-translational modifications for LOC642381 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642381 Gene

Domains & Families for LOC642381 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642381 Gene

Function for LOC642381 Gene

Phenotypes From GWAS Catalog for LOC642381 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642381 Gene

Localization for LOC642381 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642381 Gene

Pathways & Interactions for LOC642381 Gene

PathCards logo

SuperPathways for LOC642381 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC642381 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642381 Gene

Drugs & Compounds for LOC642381 Gene

No Compound Related Data Available

Transcripts for LOC642381 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642381 Gene

No ASD Table

Relevant External Links for LOC642381 Gene

GeneLoc Exon Structure for
LOC642381

No data available for mRNA/cDNA for LOC642381 Gene

Expression for LOC642381 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642381 Gene

genes like me logo Genes that share expression patterns with LOC642381: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642381 Gene

Orthologs for LOC642381 Gene

No data available for Orthologs and Evolution for LOC642381 Gene

Paralogs for LOC642381 Gene

No data available for Paralogs for LOC642381 Gene

Variants for LOC642381 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642381 Gene

Disorders for LOC642381 Gene

No disorders were found for LOC642381 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642381 Gene

Publications for LOC642381 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for LOC642381 Gene

Products for LOC642381 Gene

Sources for LOC642381 Gene