Aliases for LOC642366 Gene

Subcategory (RNA class) for LOC642366 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC642366 Gene

  • Uncharacterized LOC642366 3
  • Novel Transcript, Antisense To ISL1 5
  • CTD-2314G24.2 3
  • NONHSAG040353 92
  • HSALNG0041680 167
  • HSALNG0041681 167
  • AC010478.1 5
  • Lnc-EMB-4 168

External Ids for LOC642366 Gene

Previous GeneCards Identifiers for LOC642366 Gene

  • GC05M050708
  • GC05M050672

Summaries for LOC642366 Gene

GeneCards Summary for LOC642366 Gene

LOC642366 (Uncharacterized LOC642366) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC642366 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642366 Gene

Genomics for LOC642366 Gene

GeneHancer (GH) Regulatory Elements for LOC642366 Gene

Promoters and enhancers for LOC642366 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J051379 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.2 -240 13.8 EP300 CTCF JUND ZIC2 REST ZBTB10 ZBTB26 HDAC2 MXI1 ZNF341 LOC642366 ISL1 EMB HMGB1P47 lnc-EMB-9
GH05J051397 Enhancer 0.8 ENCODE dbSUPER 0.4 -15.3 -15308 2.1 GATA3 TCF12 CHD2 SUZ12 TAF15 STAT1 RNF2 CHD1 L3MBTL2 YY1 lnc-EMB-9 HMGB1P47 LOC642366
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642366 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC642366 gene promoter:
  • AP-1
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • STAT1

Genomic Locations for LOC642366 Gene

Genomic Locations for LOC642366 Gene
chr5:51,370,221-51,383,660
(GRCh38/hg38)
Size:
13,440 bases
Orientation:
Minus strand
chr5:50,668,570-50,679,488
(GRCh37/hg19)
Size:
10,919 bases
Orientation:
Minus strand

Genomic View for LOC642366 Gene

Genes around LOC642366 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642366 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642366 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642366 Gene

Proteins for LOC642366 Gene

Post-translational modifications for LOC642366 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642366 Gene

Domains & Families for LOC642366 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642366 Gene

Function for LOC642366 Gene

Phenotypes From GWAS Catalog for LOC642366 Gene

Phenotypes for LOC642366 Gene

genes like me logo Genes that share phenotypes with LOC642366: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642366 Gene

Localization for LOC642366 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642366 Gene

Pathways & Interactions for LOC642366 Gene

PathCards logo

SuperPathways for LOC642366 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC642366 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642366 Gene

Drugs & Compounds for LOC642366 Gene

No Compound Related Data Available

Transcripts for LOC642366 Gene

mRNA/cDNA for LOC642366 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
14 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642366 Gene

No ASD Table

Relevant External Links for LOC642366 Gene

GeneLoc Exon Structure for
LOC642366

Expression for LOC642366 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642366 Gene

mRNA differential expression in normal tissues according to GTEx for LOC642366 Gene

This gene is overexpressed in Vagina (x10.2), Prostate (x8.5), Esophagus - Gastroesophageal Junction (x5.6), and Stomach (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC642366

SOURCE GeneReport for Unigene cluster for LOC642366 Gene:

Hs.544139
genes like me logo Genes that share expression patterns with LOC642366: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642366 Gene

Orthologs for LOC642366 Gene

Evolution for LOC642366 Gene

ENSEMBL:
Gene Tree for LOC642366 (if available)
TreeFam:
Gene Tree for LOC642366 (if available)

No data available for Orthologs for LOC642366 Gene

Paralogs for LOC642366 Gene

No data available for Paralogs for LOC642366 Gene

Variants for LOC642366 Gene

Additional dbSNP identifiers (rs#s) for LOC642366 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC642366 Gene

Variant ID Type Subtype PubMed ID
nsv830288 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC642366 Gene

Disorders for LOC642366 Gene

No disorders were found for LOC642366 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642366 Gene

Publications for LOC642366 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LOC642366 Gene

Products for LOC642366 Gene

Sources for LOC642366 Gene