Aliases for LOC642361 Gene

Subcategory (RNA class) for LOC642361 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC642361 Gene

  • Uncharacterized LOC642361 3
  • Novel Transcript 5
  • HSALNG0079162 169
  • NONHSAG006343 94
  • Lnc-NUTM2E-1 170
  • AL135925.1 5
  • LINC00863 2

External Ids for LOC642361 Gene

Previous GeneCards Identifiers for LOC642361 Gene

  • GC10P081575
  • GC02P120950
  • GC10P081585
  • GC10P080045
  • GC10P080066
  • GC10P081984
  • GC10P082146
  • GC10P080090
  • GC10P080113
  • GC10P080137
  • GC10P080159
  • GC10P080360
  • GC10P080381
  • GC10P081544
  • GC10P081873

Summaries for LOC642361 Gene

GeneCards Summary for LOC642361 Gene

LOC642361 (Uncharacterized LOC642361) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC642361 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642361 Gene

Genomics for LOC642361 Gene

GeneHancer (GH) Regulatory Elements for LOC642361 Gene

Promoters and enhancers for LOC642361 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642361 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC642361 gene promoter:
  • C/EBPalpha
  • E2F-1
  • E2F-2
  • E2F-3a
  • Egr-1
  • Egr-4
  • HOXA5
  • LUN-1
  • Pax-5
  • Pax-6

Genomic Locations for LOC642361 Gene

Genomic Locations for LOC642361 Gene
chr10:79,815,886-79,841,573
(GRCh38/hg38)
Size:
25,688 bases
Orientation:
Plus strand
chr10:81,585,658-81,587,358
(GRCh37/hg19)
Size:
1,701 bases
Orientation:
Plus strand

Genomic View for LOC642361 Gene

Genes around LOC642361 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642361 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642361 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642361 Gene

Proteins for LOC642361 Gene

Post-translational modifications for LOC642361 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642361 Gene

Domains & Families for LOC642361 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642361 Gene

Function for LOC642361 Gene

Phenotypes From GWAS Catalog for LOC642361 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642361 Gene

Localization for LOC642361 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642361 Gene

Pathways & Interactions for LOC642361 Gene

PathCards logo

SuperPathways for LOC642361 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC642361 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC642361 Gene

Drugs & Compounds for LOC642361 Gene

No Compound Related Data Available

Transcripts for LOC642361 Gene

mRNA/cDNA for LOC642361 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(9) LNCipedia transcripts :
(3) LncBook transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642361 Gene

No ASD Table

Relevant External Links for LOC642361 Gene

GeneLoc Exon Structure for
LOC642361

Expression for LOC642361 Gene

SOURCE GeneReport for Unigene cluster for LOC642361 Gene:

Hs.164298
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642361 Gene

Orthologs for LOC642361 Gene

Evolution for LOC642361 Gene

ENSEMBL:
Gene Tree for LOC642361 (if available)
TreeFam:
Gene Tree for LOC642361 (if available)

No data available for Orthologs for LOC642361 Gene

Paralogs for LOC642361 Gene

No data available for Paralogs for LOC642361 Gene

Variants for LOC642361 Gene

Sequence variations from dbSNP and Humsavar for LOC642361 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000236357 -- 79,825,863(+) A/G upstream_transcript_variant
rs1000670512 -- 79,826,039(+) C/A/G non_coding_transcript_variant
rs1001946692 -- 79,825,058(+) G/A upstream_transcript_variant
rs1003029842 -- 79,826,991(+) A/G non_coding_transcript_variant
rs1004139868 -- 79,824,021(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC642361 Gene

Variant ID Type Subtype PubMed ID
esv3623925 CNV loss 21293372
esv3623926 CNV gain 21293372
esv3891868 CNV gain+loss 25118596
nsv1069062 CNV deletion 25765185
nsv1126262 CNV deletion 24896259
nsv1141879 OTHER inversion 24896259
nsv442193 CNV gain+loss 18776908
nsv551627 CNV loss 21841781
nsv948095 CNV duplication 23825009
nsv950983 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC642361 Gene

Disorders for LOC642361 Gene

No disorders were found for LOC642361 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642361 Gene

Publications for LOC642361 Gene

  1. CCG repeats in cDNAs from human brain. (PMID: 9921901) Kleiderlein JJ … Margolis RL (Human genetics 1998) 3 56

No data available for External Links for LOC642361 Gene

Products for LOC642361 Gene

Sources for LOC642361 Gene