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Aliases for LOC642361 Gene

Subcategory (RNA class) for LOC642361 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC642361 Gene

  • Uncharacterized LOC642361 3
  • AL135925.1 5

External Ids for LOC642361 Gene

Previous GeneCards Identifiers for LOC642361 Gene

  • GC10P081575
  • GC02P120950
  • GC10P081585
  • GC10P080045
  • GC10P080066
  • GC10P080090
  • GC10P080113
  • GC10P080137
  • GC10P080159
  • GC10P080360
  • GC10P080381

Summaries for LOC642361 Gene

GeneCards Summary for LOC642361 Gene

LOC642361 (Uncharacterized LOC642361) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC642361 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC642361 Gene

Genomics for LOC642361 Gene

GeneHancer (GH) Regulatory Elements for LOC642361 Gene

Promoters and enhancers for LOC642361 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J079825 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 +0.7 701 3.2 HDGF PKNOX1 ATF1 ARNT SIN3A POLR2B ZNF207 ZNF143 ATF7 SP3 GC10P081580 LOC642361 NUTM2B-AS1 ZMIZ1-AS1 MBL1P ENSG00000272489 NUTM2E NUTM2B PIR60133
GH10J079066 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19.5 -749.4 -749448 20.2 MLX FEZF1 DMAP1 YY1 ZNF143 SP3 MEF2D ZNF610 ZNF585B GLIS1 SFTPA1 LOC642361 NPAP1P2 PGGT1BP2 ENSG00000272489 ENSG00000224886 ZMIZ1 SFTPD-AS1 ZMIZ1-AS1 GC10M079169
GH10J079378 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 21.5 -444.9 -444875 4.2 FOXA2 MLX ARID4B ZNF48 ETS1 YY1 SLC30A9 GLIS2 ELK1 RXRA ENSG00000235426 LOC642361 ZMIZ1-AS1 PPIF ZCCHC24 SFTPD-AS1
GH10J080406 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 +585.8 585844 10.7 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF143 FAM213A DYDC2 LOC642361 DYDC1 MBL1P PLAC9 ANXA11 PIR57963
GH10J079135 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.4 -675.0 -674990 31.6 MLX ZFP64 FEZF1 DMAP1 YY1 SP3 ZC3H11A MEF2D GLIS1 RCOR2 PPIF ENSG00000272489 ZMIZ1-AS1 NPAP1P2 PGGT1BP2 LOC642361 ZMIZ1 GC10M079169
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642361 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC642361 gene promoter:
  • HOXA5
  • Egr-1
  • Egr-4
  • LUN-1
  • Pax-5
  • Pax-6
  • C/EBPalpha
  • E2F-1
  • E2F-2
  • E2F-3a

Genomic Locations for LOC642361 Gene

Genomic Locations for LOC642361 Gene
chr10:79,825,902-79,827,602
(GRCh38/hg38)
Size:
1,701 bases
Orientation:
Plus strand
chr10:81,585,658-81,587,358
(GRCh37/hg19)
Size:
1,701 bases
Orientation:
Plus strand

Genomic View for LOC642361 Gene

Genes around LOC642361 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642361 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642361 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642361 Gene

Proteins for LOC642361 Gene

Post-translational modifications for LOC642361 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642361 Gene

Domains & Families for LOC642361 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC642361 Gene

Function for LOC642361 Gene

Phenotypes From GWAS Catalog for LOC642361 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642361 Gene

Localization for LOC642361 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642361 Gene

Pathways & Interactions for LOC642361 Gene

SuperPathways for LOC642361 Gene

No Data Available

Interacting Proteins for LOC642361 Gene

Gene Ontology (GO) - Biological Process for LOC642361 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC642361 Gene

Drugs & Compounds for LOC642361 Gene

No Compound Related Data Available

Transcripts for LOC642361 Gene

mRNA/cDNA for LOC642361 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC642361 Gene

Uncharacterized LOC642361:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642361 Gene

No ASD Table

Relevant External Links for LOC642361 Gene

GeneLoc Exon Structure for
LOC642361

Expression for LOC642361 Gene

SOURCE GeneReport for Unigene cluster for LOC642361 Gene:

Hs.164298
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642361 Gene

Orthologs for LOC642361 Gene

Evolution for LOC642361 Gene

ENSEMBL:
Gene Tree for LOC642361 (if available)
TreeFam:
Gene Tree for LOC642361 (if available)

No data available for Orthologs for LOC642361 Gene

Paralogs for LOC642361 Gene

No data available for Paralogs for LOC642361 Gene

Variants for LOC642361 Gene

Sequence variations from dbSNP and Humsavar for LOC642361 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000236357 -- 79,825,863(+) A/G upstream_transcript_variant
rs1000670512 -- 79,826,039(+) C/G non_coding_transcript_variant
rs1001946692 -- 79,825,058(+) G/A upstream_transcript_variant
rs1003029842 -- 79,826,991(+) A/G non_coding_transcript_variant
rs1004139868 -- 79,824,021(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC642361 Gene

Variant ID Type Subtype PubMed ID
esv3623925 CNV loss 21293372
esv3623926 CNV gain 21293372
esv3891868 CNV gain+loss 25118596
nsv1069062 CNV deletion 25765185
nsv1126262 CNV deletion 24896259
nsv1141879 OTHER inversion 24896259
nsv442193 CNV gain+loss 18776908
nsv551627 CNV loss 21841781
nsv948095 CNV duplication 23825009
nsv950983 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC642361 Gene

Disorders for LOC642361 Gene

Additional Disease Information for LOC642361

No disorders were found for LOC642361 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC642361 Gene

Publications for LOC642361 Gene

  1. CCG repeats in cDNAs from human brain. (PMID: 9921901) Kleiderlein JJ … Margolis RL (Human genetics 1998) 3 58

Products for LOC642361 Gene

Sources for LOC642361 Gene

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