Aliases for LOC642131 Gene

Aliases for LOC642131 Gene

  • Immunoglobulin IGHV1OR15-3-Like Pseudogene 3
  • Putative V-Set And Immunoglobulin Domain-Containing-Like Protein IGHV4OR15-8 3

External Ids for LOC642131 Gene

Previous GeneCards Identifiers for LOC642131 Gene

  • GC15M019973
  • GC15M019972
  • GC15M022471
  • GC15M000871

Summaries for LOC642131 Gene

GeneCards Summary for LOC642131 Gene

LOC642131 (Immunoglobulin IGHV1OR15-3-Like Pseudogene) is a Pseudogene. An important paralog of this gene is LOC102724971.

Additional gene information for LOC642131 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC642131 Gene

Genomics for LOC642131 Gene

GeneHancer (GH) Regulatory Elements for LOC642131 Gene

Promoters and enhancers for LOC642131 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J022184 Enhancer 0.9 Ensembl ENCODE dbSUPER 500.7 -0.6 -609 3 CTCF SMC3 NR2F1 NR2F6 ATF2 CREM MAX RAD21 CTCFL ZNF143 LOC642131 IGHV4OR15-8 lnc-POTEB-15 IGHV1OR15-4
GH15J022182 Enhancer 0.5 dbSUPER 500.7 +1.9 1942 1.4 ZNF316 NFE2 NFE2L1 MAFG NFE2L2 MAFF MAFK EMSY LOC642131 IGHV4OR15-8 lnc-POTEB-15 IGHV1OR15-1
GH15J022177 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +6.4 6406 3.4 CTCF REST TRIM22 MEF2B ZNF654 USF2 RAD51 MTA2 RB1 LOC642131 IGHV4OR15-8 lnc-POTEB-15 IGHV1OR15-1
GH15J022194 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -9.3 -9310 4 CTCF NR3C1 IGHV1OR15-4 LOC642131 lnc-POTEB-4 LOC101928039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC642131 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC642131 gene promoter:
  • C/EBPalpha
  • FOXO4
  • HFH-1
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1b
  • POU2F1
  • POU2F1a
  • SEF-1 (1)

Genomic Locations for LOC642131 Gene

Genomic Locations for LOC642131 Gene
chr15:22,177,502-22,185,491
(GRCh38/hg38)
Size:
7,990 bases
Orientation:
Minus strand
chr15:22,471,454-22,473,353
(GRCh37/hg19)
Size:
1,900 bases
Orientation:
Minus strand

Genomic View for LOC642131 Gene

Genes around LOC642131 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642131 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642131 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642131 Gene

Proteins for LOC642131 Gene

Post-translational modifications for LOC642131 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642131 Gene

Domains & Families for LOC642131 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC642131 Gene

Function for LOC642131 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642131 Gene

Localization for LOC642131 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642131 Gene

Pathways & Interactions for LOC642131 Gene

PathCards logo

SuperPathways for LOC642131 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC642131 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC642131 Gene

Drugs & Compounds for LOC642131 Gene

No Compound Related Data Available

Transcripts for LOC642131 Gene

mRNA/cDNA for LOC642131 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642131 Gene

No ASD Table

Relevant External Links for LOC642131 Gene

GeneLoc Exon Structure for
LOC642131

Expression for LOC642131 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC642131 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC642131

genes like me logo Genes that share expression patterns with LOC642131: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642131 Gene

Orthologs for LOC642131 Gene

No data available for Orthologs and Evolution for LOC642131 Gene

Paralogs for LOC642131 Gene

Paralogs for LOC642131 Gene

genes like me logo Genes that share paralogs with LOC642131: view

Variants for LOC642131 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC642131 Gene

Disorders for LOC642131 Gene

No disorders were found for LOC642131 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC642131 Gene

Publications for LOC642131 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LOC642131 Gene

Products for LOC642131 Gene

Sources for LOC642131 Gene