Aliases for LOC641708 Gene

Aliases for LOC641708 Gene

  • Hydroxysteroid 17-Beta Dehydrogenase 12 Pseudogene 3
  • Steroid Dehydrogenase Homolog Pseudogene 5
  • AL390955.1 5

External Ids for LOC641708 Gene

Previous GeneCards Identifiers for LOC641708 Gene

  • GC06M157708
  • GC06M157710
  • GC06M157788

Summaries for LOC641708 Gene

GeneCards Summary for LOC641708 Gene

LOC641708 (Hydroxysteroid 17-Beta Dehydrogenase 12 Pseudogene) is a Pseudogene.

Additional gene information for LOC641708 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC641708 Gene

Genomics for LOC641708 Gene

GeneHancer (GH) Regulatory Elements for LOC641708 Gene

Promoters and enhancers for LOC641708 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J157464 Enhancer 1 Ensembl ENCODE 5.2 -98.5 -98513 2.1 ZBTB40 SP1 EP300 RELA MEF2C TRIM22 BCL11A TCF12 ZNF316 CBFB ZDHHC14 LOC641708 FJ601684-414 RF00017-5902
GH06J157468 Enhancer 0.8 Ensembl ENCODE 5.1 -102.2 -102212 2.1 ZNF217 RFX1 CTBP1 ESRRA ELK1 ZKSCAN1 CEBPG CEBPB NEUROD1 ELF1 ZDHHC14 LOC641708 FJ601684-414 RF00017-5902
GH06J157385 Enhancer 0.7 Ensembl 5.9 -18.5 -18478 0.8 EP300 TRIM22 BCL11A ARNT MEF2B CHD1 NBN IKZF1 NR2F1 NFATC3 piR-48759-275 LOC641708 HSALNG0054621 ZDHHC14 lnc-ARID1B-5
GH06J157449 Enhancer 0.7 Ensembl 6.1 -83.1 -83078 1.2 TRIM28 ZNF316 TCF7L2 MAFF MAFK ZNF335 MAFG PRDM6 RFX5 ZBTB33 LOC641708 FJ601684-414 ZDHHC14 RF00017-5902
GH06J157369 Enhancer 1 Ensembl ENCODE 0.7 -2.6 -2578 1.8 EP300 RFX1 RELA MEF2C TRIM22 HINFP BCL11A CBFB CEBPG ARNT piR-57133-531 LOC641708 lnc-TMEM242-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC641708 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC641708 Gene

Genomic Locations for LOC641708 Gene
chr6:157,365,988-157,366,923
(GRCh38/hg38)
Size:
936 bases
Orientation:
Minus strand
chr6:157,787,020-157,787,955
(GRCh37/hg19)
Size:
936 bases
Orientation:
Minus strand

Genomic View for LOC641708 Gene

Genes around LOC641708 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC641708 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC641708 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC641708 Gene

Proteins for LOC641708 Gene

Post-translational modifications for LOC641708 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC641708 Gene

Domains & Families for LOC641708 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC641708 Gene

Function for LOC641708 Gene

Phenotypes From GWAS Catalog for LOC641708 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC641708 Gene

Localization for LOC641708 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC641708 Gene

Pathways & Interactions for LOC641708 Gene

PathCards logo

SuperPathways for LOC641708 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC641708 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC641708 Gene

Drugs & Compounds for LOC641708 Gene

No Compound Related Data Available

Transcripts for LOC641708 Gene

mRNA/cDNA for LOC641708 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC641708 Gene

No ASD Table

Relevant External Links for LOC641708 Gene

GeneLoc Exon Structure for
LOC641708

Expression for LOC641708 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC641708 Gene

mRNA differential expression in normal tissues according to GTEx for LOC641708 Gene

This gene is overexpressed in Brain - Cerebellum (x5.2), Brain - Cerebellar Hemisphere (x4.7), and Brain - Nucleus accumbens (basal ganglia) (x4.1).
genes like me logo Genes that share expression patterns with LOC641708: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC641708 Gene

Orthologs for LOC641708 Gene

Evolution for LOC641708 Gene

ENSEMBL:
Gene Tree for LOC641708 (if available)
TreeFam:
Gene Tree for LOC641708 (if available)

No data available for Orthologs for LOC641708 Gene

Paralogs for LOC641708 Gene

No data available for Paralogs for LOC641708 Gene

Variants for LOC641708 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC641708 Gene

Disorders for LOC641708 Gene

No disorders were found for LOC641708 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC641708 Gene

Publications for LOC641708 Gene

No publications were found for LOC641708 Gene.

No data available for Mastermind for LOC641708 Gene

Products for LOC641708 Gene

Sources for LOC641708 Gene