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Aliases for LOC613038 Gene

Aliases for LOC613038 Gene

  • SAGA Complex Associated Factor 29 Pseudogene 3
  • Coiled-Coil Domain Containing 101 Pseudogene 3
  • SAGA-Associated Factor 29 Homolog 3

External Ids for LOC613038 Gene

Previous GeneCards Identifiers for LOC613038 Gene

  • GC16U900500
  • GC16M030124

Summaries for LOC613038 Gene

GeneCards Summary for LOC613038 Gene

LOC613038 (SAGA Complex Associated Factor 29 Pseudogene) is a Pseudogene.

Additional gene information for LOC613038 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC613038 Gene

Genomics for LOC613038 Gene

GeneHancer (GH) Regulatory Elements for LOC613038 Gene

Promoters and enhancers for LOC613038 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030205 Promoter/Enhancer 1 Ensembl dbSUPER 600.7 +0.6 626 2.2 ELF1 ZNF335 KDM1A FOS ENSG00000278887 LOC613038 PIR44576 ENSG00000258130
GH16J030206 Enhancer 0.2 dbSUPER 600.7 -1.4 -1395 0.9 ENSG00000258130 LOC613038 PIR51101
GH16J030203 Enhancer 0.2 dbSUPER 0.7 +2.6 2585 1 ENSG00000278887 PIR44576 LOC613038 ENSG00000258130 SULT1A3 SLX1A-SULT1A3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC613038 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC613038 gene promoter:
  • AML1a
  • c-Myb
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Nkx5-1
  • YY1

Genomic Locations for LOC613038 Gene

Genomic Locations for LOC613038 Gene
chr16:30,204,316-30,206,927
(GRCh38/hg38)
Size:
2,612 bases
Orientation:
Minus strand
chr16:30,215,637-30,218,248
(GRCh37/hg19)
Size:
2,612 bases
Orientation:
Minus strand

Genomic View for LOC613038 Gene

Genes around LOC613038 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC613038 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC613038 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC613038 Gene

Proteins for LOC613038 Gene

Post-translational modifications for LOC613038 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC613038 Gene

Domains & Families for LOC613038 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC613038 Gene

Function for LOC613038 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC613038 Gene

Localization for LOC613038 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC613038 Gene

Pathways & Interactions for LOC613038 Gene

PathCards logo

SuperPathways for LOC613038 Gene

No Data Available

Interacting Proteins for LOC613038 Gene

Gene Ontology (GO) - Biological Process for LOC613038 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC613038 Gene

Drugs & Compounds for LOC613038 Gene

No Compound Related Data Available

Transcripts for LOC613038 Gene

mRNA/cDNA for LOC613038 Gene

(1) Additional mRNA sequences :

Unigene Clusters for LOC613038 Gene

Coiled-coil domain containing 101 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC613038 Gene

No ASD Table

Relevant External Links for LOC613038 Gene

GeneLoc Exon Structure for
LOC613038

Expression for LOC613038 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC613038 Gene

SOURCE GeneReport for Unigene cluster for LOC613038 Gene:

Hs.569585
genes like me logo Genes that share expression patterns with LOC613038: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC613038 Gene

Orthologs for LOC613038 Gene

No data available for Orthologs and Evolution for LOC613038 Gene

Paralogs for LOC613038 Gene

No data available for Paralogs for LOC613038 Gene

Variants for LOC613038 Gene

Sequence variations from dbSNP and Humsavar for LOC613038 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1005140100 -- 30,205,728(-) G/A intron_variant
rs1007135476 -- 30,206,452(-) G/A non_coding_transcript_variant
rs1022133047 -- 30,206,944(-) A/G upstream_transcript_variant
rs1029070555 -- 30,206,149(-) A/G non_coding_transcript_variant
rs1036328921 -- 30,206,029(-) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC613038 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2714183 CNV deletion 23290073
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3388213 CNV duplication 20981092
esv3392583 CNV duplication 20981092
esv3444439 CNV duplication 20981092
esv3451126 CNV duplication 20981092
nsv1056249 CNV gain 25217958
nsv1078392 CNV duplication 25765185
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv471389 CNV gain 19718026
nsv498862 CNV loss 21111241
nsv571809 CNV loss 21841781
nsv571810 CNV loss 21841781
nsv571811 CNV loss 21841781
nsv820959 CNV duplication 20802225
nsv821543 CNV duplication 20802225
nsv9426 CNV gain 18304495
nsv9431 CNV gain+loss 18304495
nsv953799 CNV deletion 24416366
nsv977952 CNV duplication 23825009
nsv977953 CNV duplication 23825009
nsv977954 CNV duplication 23825009
nsv977955 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC613038 Gene

Disorders for LOC613038 Gene

No disorders were found for LOC613038 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC613038 Gene

Publications for LOC613038 Gene

No publications were found for LOC613038 Gene.

No data available for External Links for LOC613038 Gene

Products for LOC613038 Gene

Sources for LOC613038 Gene

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