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Aliases for LOC574538 Gene

Subcategory (RNA class) for LOC574538 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC574538 Gene

  • Uncharacterized LOC574538 3
  • Novel Transcript, Antisense To IQSEC3 5
  • AC026369.1 5

External Ids for LOC574538 Gene

Previous GeneCards Identifiers for LOC574538 Gene

  • GC12U900512
  • GC12M000248

Summaries for LOC574538 Gene

GeneCards Summary for LOC574538 Gene

LOC574538 (Uncharacterized LOC574538) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC574538 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC574538 Gene

Genomics for LOC574538 Gene

GeneHancer (GH) Regulatory Elements for LOC574538 Gene

Promoters and enhancers for LOC574538 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000149 Enhancer 0.4 Ensembl dbSUPER 613.8 -0.3 -332 0.2 LOC574538 IQSEC3 ENSG00000256694
GH12J000147 Enhancer 0.3 dbSUPER 613.7 +1.8 1770 0.7 FOS LOC574538 LOC105369593 IQSEC3
GH12J000152 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 -3.9 -3885 1.9 CTCF SP7 RAD21 GLIS2 ZNF600 ZIC2 REST RXRB ATF7 ZNF629 ENSG00000255671 LOC101929384 SLC6A12 SLC6A13 LOC574538 LOC102723544 IQSEC3 ENSG00000256694
GH12J000180 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11 -31.4 -31395 0.9 ZFX MLLT1 ZNF687 ZIC2 MGA RUNX3 MNT BHLHE40 VEZF1 MAX ENSG00000256540 LOC574538 SLC6A12 LOC105369592 ENSG00000256694
GH12J000075 Promoter/Enhancer 1.1 Ensembl dbSUPER 10.9 +71.1 71068 0.6 ZFX EGR1 GATAD2B MGA ZFHX2 NFE2 VEZF1 EGR2 L3MBTL2 ENSG00000256694 LOC574538 IQSEC3 ENSG00000256948
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC574538 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC574538 Gene

Genomic Locations for LOC574538 Gene
chr12:137,411-149,169
(GRCh38/hg38)
Size:
11,759 bases
Orientation:
Minus strand
chr12:246,577-258,335
(GRCh37/hg19)
Size:
11,759 bases
Orientation:
Minus strand

Genomic View for LOC574538 Gene

Genes around LOC574538 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC574538 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC574538 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC574538 Gene

Proteins for LOC574538 Gene

Post-translational modifications for LOC574538 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC574538 Gene

Domains & Families for LOC574538 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC574538 Gene

Function for LOC574538 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC574538 Gene

Localization for LOC574538 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC574538 Gene

Pathways & Interactions for LOC574538 Gene

PathCards logo

SuperPathways for LOC574538 Gene

No Data Available

Interacting Proteins for LOC574538 Gene

Gene Ontology (GO) - Biological Process for LOC574538 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC574538 Gene

Drugs & Compounds for LOC574538 Gene

No Compound Related Data Available

Transcripts for LOC574538 Gene

mRNA/cDNA for LOC574538 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC574538 Gene

Uncharacterized LOC574538:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC574538 Gene

No ASD Table

Relevant External Links for LOC574538 Gene

GeneLoc Exon Structure for
LOC574538

Expression for LOC574538 Gene

SOURCE GeneReport for Unigene cluster for LOC574538 Gene:

Hs.589138
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC574538 Gene

Orthologs for LOC574538 Gene

Evolution for LOC574538 Gene

ENSEMBL:
Gene Tree for LOC574538 (if available)
TreeFam:
Gene Tree for LOC574538 (if available)

No data available for Orthologs for LOC574538 Gene

Paralogs for LOC574538 Gene

No data available for Paralogs for LOC574538 Gene

Variants for LOC574538 Gene

Sequence variations from dbSNP and Humsavar for LOC574538 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000156739 -- 144,668(-) G/A intron_variant
rs1000318306 -- 147,778(-) C/T intron_variant
rs1000421051 -- 142,249(-) C/T non_coding_transcript_variant
rs1000600707 -- 148,543(-) T/C intron_variant
rs1000670357 -- 147,522(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC574538 Gene

Variant ID Type Subtype PubMed ID
dgv1329n100 CNV gain 25217958
dgv1330n100 CNV gain 25217958
dgv1331n100 CNV gain 25217958
dgv430e212 CNV gain 25503493
esv3628221 CNV gain 21293372
esv3628222 CNV loss 21293372
esv3628223 CNV gain 21293372
nsv1035539 CNV gain 25217958
nsv1041720 CNV gain 25217958
nsv428269 CNV gain+loss 18775914
nsv468943 CNV gain 19166990
nsv470252 CNV gain 18288195
nsv556852 CNV gain 21841781
nsv556853 CNV gain 21841781
nsv568 CNV insertion 18451855
nsv826171 CNV gain 20364138
nsv826172 CNV gain 20364138
nsv832301 CNV gain+loss 17160897
nsv832302 CNV gain 17160897

Variation tolerance for LOC574538 Gene

Gene Damage Index Score: 0.74; 15.71% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LOC574538 Gene

Disorders for LOC574538 Gene

No disorders were found for LOC574538 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC574538 Gene

Publications for LOC574538 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC574538 Gene

Products for LOC574538 Gene

Sources for LOC574538 Gene

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