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Aliases for LOC554206 Gene

Aliases for LOC554206 Gene

  • Leucine Carboxyl Methyltransferase 1 Pseudogene 3
  • AC133552.2 5

External Ids for LOC554206 Gene

Previous GeneCards Identifiers for LOC554206 Gene

  • GC16U900509
  • GC16P024951

Summaries for LOC554206 Gene

GeneCards Summary for LOC554206 Gene

LOC554206 (Leucine Carboxyl Methyltransferase 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC554206 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC554206 Gene

Genomics for LOC554206 Gene

GeneHancer (GH) Regulatory Elements for LOC554206 Gene

Promoters and enhancers for LOC554206 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I025029 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 563.9 -0.5 -507 3 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 LOC554206 RBBP6 PIR61012
GH16I025256 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 62.7 +226.1 226082 2.8 MLX ZFP64 FEZF1 DMAP1 IRF4 ZNF213 ZNF416 ZNF143 ZNF548 SP3 ZKSCAN2 ENSG00000274925 GC16P025953 RBBP6 LOC554206 ENSG00000261669 SCML2P2 HMGN2P3 ENSG00000263326 ARHGAP17
GH16I025047 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 32.5 +18.6 18576 5.3 HDGF PKNOX1 SMAD1 ARNT ZFP64 SIN3A FEZF1 ZNF2 POLR2B ZNF213 RBBP6 LOC100421173 ENSG00000263326 ZKSCAN2 SCML2P2 LOC554206 ENSG00000261669 HMGN2P3 LINC02175 LCMT1
GH16I025009 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 7.8 -16.5 -16487 11.7 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 ARID4B SIN3A IRF4 YY1 SLC30A9 ARHGAP17 GC16P025016 PIR39777 LOC100421171 PIR34579 RBBP6 LOC554206 LINC02175 ENSG00000261669 PIR57337
GH16I024982 Enhancer 1.4 Ensembl ENCODE dbSUPER 7.3 -41.8 -41777 14.7 PKNOX1 CLOCK FOXA2 ARNT MLX ARID4B FEZF1 ZNF2 YY1 ZNF766 ARHGAP17 RBBP6 SLC5A11 LOC554206 ENSG00000261669 GC16M024999 PIR57337 GC16P024922
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC554206 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC554206 gene promoter:

Genomic Locations for LOC554206 Gene

Genomic Locations for LOC554206 Gene
chr16:25,031,741-25,058,109
(GRCh38/hg38)
Size:
26,369 bases
Orientation:
Plus strand
chr16:25,043,062-25,069,430
(GRCh37/hg19)

Genomic View for LOC554206 Gene

Genes around LOC554206 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC554206 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC554206 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC554206 Gene

Proteins for LOC554206 Gene

Post-translational modifications for LOC554206 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC554206 Gene

Domains & Families for LOC554206 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC554206 Gene

Function for LOC554206 Gene

Phenotypes From GWAS Catalog for LOC554206 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC554206 Gene

Localization for LOC554206 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC554206 Gene

Pathways & Interactions for LOC554206 Gene

SuperPathways for LOC554206 Gene

No Data Available

Interacting Proteins for LOC554206 Gene

Gene Ontology (GO) - Biological Process for LOC554206 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC554206 Gene

Drugs & Compounds for LOC554206 Gene

No Compound Related Data Available

Transcripts for LOC554206 Gene

mRNA/cDNA for LOC554206 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC554206 Gene

Leucine carboxyl methyltransferase 1 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC554206 Gene

No ASD Table

Relevant External Links for LOC554206 Gene

GeneLoc Exon Structure for
LOC554206

Expression for LOC554206 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC554206 Gene

SOURCE GeneReport for Unigene cluster for LOC554206 Gene:

Hs.552959
genes like me logo Genes that share expression patterns with LOC554206: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC554206 Gene

Orthologs for LOC554206 Gene

Evolution for LOC554206 Gene

ENSEMBL:
Gene Tree for LOC554206 (if available)
TreeFam:
Gene Tree for LOC554206 (if available)

No data available for Orthologs for LOC554206 Gene

Paralogs for LOC554206 Gene

No data available for Paralogs for LOC554206 Gene

Variants for LOC554206 Gene

Sequence variations from dbSNP and Humsavar for LOC554206 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000029951 -- 25,030,483(+) A/G upstream_transcript_variant
rs1001091656 -- 25,030,490(+) G/T upstream_transcript_variant
rs1001201959 -- 25,029,858(+) C/A upstream_transcript_variant
rs1001654687 -- 25,030,048(+) G/A upstream_transcript_variant
rs1002308318 -- 25,030,852(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC554206 Gene

Variant ID Type Subtype PubMed ID
esv2758638 CNV gain+loss 17122850
nsv833175 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC554206 Gene

Disorders for LOC554206 Gene

Additional Disease Information for LOC554206

No disorders were found for LOC554206 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC554206 Gene

Publications for LOC554206 Gene

  1. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland SL … Hayden MR (Human molecular genetics 2014) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC554206 Gene

Sources for LOC554206 Gene

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