Aliases for LOC51145 Gene

Data sources for LOC51145 Gene:

Subcategory (RNA class) for LOC51145 Gene

lncRNA

Aliases for LOC51145 Gene

External Ids for LOC51145 Gene

  • NCBI Entrez Gene: 51145

Previous GeneCards Identifiers for LOC51145 Gene

  • GC09M119621
  • GC09M120153
  • GC09M121960
  • GC09M123882
  • GC09U900640
  • GC09M127548
  • GC09M128507

Summaries for LOC51145 Gene

GeneCards Summary for LOC51145 Gene

LOC51145 (Uncharacterized LOC51145) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC51145 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC51145 Gene

Genomics for LOC51145 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC51145 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J125744 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -2.2 -2220 8.1 ZSCAN16 ZBTB10 SP1 MXD4 FEZF1 CEBPA ZNF217 POLR2A ZBTB7B ZEB1 PBX3 PPP6C ENSG00000229582 HSALNG0074413 LOC51145 lnc-GAPVD1-6 lnc-PBX3-1 MG828730-061 MVB12B
GH09J125743 Enhancer 0.7 ENCODE 0.7 +2.5 2452 0.5 FEZF1 FOXA1 FOXA2 ZNF843 PRDM6 INSM2 GLIS1 SP7 PRDM4 ZNF384 ENSG00000229582 HSALNG0074413 LOC51145 PBX3 lnc-PBX3-1 MAPKAP1 MG828730-061
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC51145 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC51145 gene promoter:
  • Hlf
  • HNF-3beta
  • HSF2
  • MZF-1
  • Nkx2-5
  • POU3F2
  • RFX1
  • S8
  • TBP
  • TFIID

Genomic Locations for LOC51145 Gene

Latest Assembly
chr9:125,741,602-125,746,552
(GRCh38/hg38)
Size:
4,951 bases
Orientation:
Minus strand

Previous Assembly
chr9:128,506,033-128,508,208
(GRCh37/hg19 by Entrez Gene)
Size:
2,176 bases
Orientation:
Minus strand

Genomic View for LOC51145 Gene

Genes around LOC51145 on UCSC Golden Path with GeneCards custom track
LOC51145 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC51145 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC51145 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC51145 Gene

Proteins for LOC51145 Gene

Post-translational modifications for LOC51145 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC51145 Gene

Domains & Families for LOC51145 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC51145 Gene

Function for LOC51145 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC51145 Gene

Localization for LOC51145 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC51145 Gene

Pathways & Interactions for LOC51145 Gene

PathCards logo

SuperPathways for LOC51145 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC51145 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC51145 Gene

Drugs & Compounds for LOC51145 Gene

No Compound Related Data Available

Transcripts for LOC51145 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC51145 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E8DF_9606 lncRNA 697 1

RefSeq: NR_122032,

URS0001BDD03C_9606 lncRNA 2374 1

LncBook: HSALNT0155371,

URS0001BDB825_9606 lncRNA 2206 1

LncBook: HSALNT0155374,

URS0001BE1E24_9606 lncRNA 2176 1

LncBook: HSALNT0155375,

LOC51145 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC51145 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC51145 Gene

No ASD Table

Relevant External Links for LOC51145 Gene

GeneLoc Exon Structure for
LOC51145

Expression for LOC51145 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC51145 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC51145

SOURCE GeneReport for Unigene cluster for LOC51145 Gene:

Hs.104671
genes like me logo Genes that share expression patterns with LOC51145: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC51145 Gene

Orthologs for LOC51145 Gene

No data available for Orthologs and Evolution for LOC51145 Gene

Paralogs for LOC51145 Gene

No data available for Paralogs for LOC51145 Gene

Variants for LOC51145 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC51145 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC51145 Gene

Variant ID Type Subtype PubMed ID
esv3576704 CNV gain 25503493
nsv1052626 CNV gain 25217958
nsv615294 CNV loss 21841781
nsv825078 CNV gain 20364138

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC51145 Gene

Disorders for LOC51145 Gene

No disorders were found for LOC51145 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC51145 Gene

Publications for LOC51145 Gene

  1. Variegated expression from the murine band 3 (AE1) promoter in transgenic mice is associated with mRNA transcript initiation at upstream start sites and can be suppressed by the addition of the chicken beta-globin 5' HS4 insulator element. (PMID: 12832463) Frazar TF … Bodine DM (Molecular and cellular biology 2003) 23
  2. Erythrocyte Mr 28,000 transmembrane protein exists as a multisubunit oligomer similar to channel proteins. (PMID: 2007592) Smith BL … Agre P (The Journal of biological chemistry 1991) 23

No data available for Mastermind for LOC51145 Gene

Products for LOC51145 Gene

Sources for LOC51145 Gene