Aliases for LOC442272 Gene

Aliases for LOC442272 Gene

  • YKT6 V-SNARE Homolog (S. Cerevisiae) Pseudogene 3

External Ids for LOC442272 Gene

Previous GeneCards Identifiers for LOC442272 Gene

  • GC06M159308
  • GC06M159257
  • GC06M159337

Summaries for LOC442272 Gene

GeneCards Summary for LOC442272 Gene

LOC442272 (YKT6 V-SNARE Homolog (S. Cerevisiae) Pseudogene) is a Pseudogene.

Additional gene information for LOC442272 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC442272 Gene

Genomics for LOC442272 Gene

GeneHancer (GH) Regulatory Elements for LOC442272 Gene

Promoters and enhancers for LOC442272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J158920 Enhancer 0.9 Ensembl ENCODE 500.7 +1.3 1349 1.6 ZBTB5 TEAD1 RELA CEBPB ZNF316 CEBPG ZNF592 ZNF395 ZNF384 NFE2 ENSG00000213076 LOC442272 C6orf99 RSPH3 piR-56037-043
GH06J158921 Enhancer 0.8 Ensembl ENCODE dbSUPER 500.7 -0.1 -109 1.2 CEBPG RAD21 ATF3 SCRT2 ENSG00000213076 LOC442272 C6orf99 RSPH3 RNU6-293P RF00026-983
GH06J158917 Enhancer 1 Ensembl ENCODE 0.7 +4.5 4549 1.6 TRIM28 CTBP1 TEAD1 ATF2 NFIC ZBTB17 ZNF184 TRIM24 CEBPG MAX C6orf99 SYNJ2-IT1 ENSG00000213076 LOC442272 piR-56037-043
GH06J158923 Enhancer 0.9 Ensembl ENCODE 0.7 -2.2 -2151 1.8 HNRNPK ZNF639 ZIC2 AFF1 TRIM28 MEF2A OSR2 PCBP1 KLF9 WT1 C6orf99 RSPH3 ENSG00000213076 LOC442272 RNU6-293P RF00026-983
GH06J158909 Enhancer 1.2 ENCODE CraniofacialAtlas dbSUPER 0.4 +10.2 10181 5 SIN3A MYC SP1 TEAD4 EP300 MEF2C POLR2A HDAC2 ZNF316 NFIC piR-56037-043 LOC442272 ENSG00000213076 C6orf99
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC442272 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC442272 Gene

Genomic Locations for LOC442272 Gene
chr6:158,921,591-158,922,150
(GRCh38/hg38)
Size:
560 bases
Orientation:
Minus strand
chr6:159,342,303-159,343,182
(GRCh37/hg19)
Size:
880 bases
Orientation:
Minus strand

Genomic View for LOC442272 Gene

Genes around LOC442272 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC442272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC442272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC442272 Gene

Proteins for LOC442272 Gene

Post-translational modifications for LOC442272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC442272 Gene

Domains & Families for LOC442272 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC442272 Gene

Function for LOC442272 Gene

Phenotypes From GWAS Catalog for LOC442272 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC442272 Gene

Localization for LOC442272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC442272 Gene

Pathways & Interactions for LOC442272 Gene

PathCards logo

SuperPathways for LOC442272 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC442272 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC442272 Gene

Drugs & Compounds for LOC442272 Gene

No Compound Related Data Available

Transcripts for LOC442272 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC442272 Gene

No ASD Table

Relevant External Links for LOC442272 Gene

GeneLoc Exon Structure for
LOC442272

No data available for mRNA/cDNA for LOC442272 Gene

Expression for LOC442272 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC442272 Gene

genes like me logo Genes that share expression patterns with LOC442272: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC442272 Gene

Orthologs for LOC442272 Gene

No data available for Orthologs and Evolution for LOC442272 Gene

Paralogs for LOC442272 Gene

No data available for Paralogs for LOC442272 Gene

Variants for LOC442272 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC442272 Gene

Disorders for LOC442272 Gene

No disorders were found for LOC442272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC442272 Gene

Publications for LOC442272 Gene

No publications were found for LOC442272 Gene.

No data available for Mastermind for LOC442272 Gene

Products for LOC442272 Gene

Sources for LOC442272 Gene