Aliases for LOC441052 Gene

Subcategory (RNA class) for LOC441052 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC441052 Gene

  • Uncharacterized LOC441052 3
  • Lnc-HMGB2-16 168

External Ids for LOC441052 Gene

Previous GeneCards Identifiers for LOC441052 Gene

  • GC04M173108
  • GC04M172969
  • GC04M172733
  • GC04U901423

Summaries for LOC441052 Gene

GeneCards Summary for LOC441052 Gene

LOC441052 (Uncharacterized LOC441052) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC441052 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC441052 Gene

Genomics for LOC441052 Gene

GeneHancer (GH) Regulatory Elements for LOC441052 Gene

Promoters and enhancers for LOC441052 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J171812 Promoter 1.5 EPDnew Ensembl CraniofacialAtlas 500.7 -0.2 -194 3.2 HDAC2 MYC SMC3 ZNF263 MXI1 CTCF E2F6 RNF2 EZH2 L3MBTL2 GALNTL6 LOC441052 piR-50443-300
GH04J171817 Enhancer 0.3 Ensembl 0.7 -3.8 -3794 0.8 SPI1 LOC441052 GALNTL6 piR-50443-300
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC441052 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC441052 gene promoter:
  • Cart-1
  • FOXJ2
  • FOXJ2 (long isoform)
  • GATA-2
  • IRF-7A
  • NF-kappaB1
  • Pax-5
  • POU2F1
  • POU2F1a
  • S8

Genomic Locations for LOC441052 Gene

Genomic Locations for LOC441052 Gene
chr4:171,812,136-171,813,607
(GRCh38/hg38)
Size:
1,472 bases
Orientation:
Minus strand

Genomic View for LOC441052 Gene

Genes around LOC441052 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC441052 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC441052 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC441052 Gene

Proteins for LOC441052 Gene

Post-translational modifications for LOC441052 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC441052 Gene

Domains & Families for LOC441052 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC441052 Gene

Function for LOC441052 Gene

genes like me logo Genes that share phenotypes with LOC441052: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC441052 Gene

Localization for LOC441052 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC441052 Gene

Pathways & Interactions for LOC441052 Gene

PathCards logo

SuperPathways for LOC441052 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC441052 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC441052 Gene

Drugs & Compounds for LOC441052 Gene

No Compound Related Data Available

Transcripts for LOC441052 Gene

mRNA/cDNA for LOC441052 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC441052 Gene

No ASD Table

Relevant External Links for LOC441052 Gene

GeneLoc Exon Structure for
LOC441052

Expression for LOC441052 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC441052 Gene

mRNA expression in normal human tissues for LOC441052 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC441052

SOURCE GeneReport for Unigene cluster for LOC441052 Gene:

Hs.535012
genes like me logo Genes that share expression patterns with LOC441052: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC441052 Gene

Orthologs for LOC441052 Gene

No data available for Orthologs and Evolution for LOC441052 Gene

Paralogs for LOC441052 Gene

No data available for Paralogs for LOC441052 Gene

Variants for LOC441052 Gene

Additional dbSNP identifiers (rs#s) for LOC441052 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC441052 Gene

Disorders for LOC441052 Gene

No disorders were found for LOC441052 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC441052 Gene

Publications for LOC441052 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 54
  3. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3 54

No data available for Mastermind for LOC441052 Gene

Products for LOC441052 Gene

Sources for LOC441052 Gene