Aliases for LOC440982 Gene

Subcategory (RNA class) for LOC440982 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC440982 Gene

  • Uncharacterized LOC440982 3
  • HSALNG0029662 167
  • Lnc-ZIC1-1 168

External Ids for LOC440982 Gene

Previous GeneCards Identifiers for LOC440982 Gene

  • GC03P148620

Summaries for LOC440982 Gene

GeneCards Summary for LOC440982 Gene

LOC440982 (Uncharacterized LOC440982) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC440982 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC440982 Gene

Genomics for LOC440982 Gene

GeneHancer (GH) Regulatory Elements for LOC440982 Gene

Promoters and enhancers for LOC440982 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J147421 Promoter/Enhancer 0.9 Ensembl dbSUPER 500.7 +0.2 173 0.6 TEAD4 EZH2 CTCF RNF2 CHD1 SUZ12 EGR1 CTBP2 RBBP5 LOC440982 ZIC1 ZIC4-AS1 ENSG00000243620 piR-38579-034
GH03J147420 Enhancer 0.6 FANTOM5 dbSUPER 500.7 -1.1 -1107 0.2 RNF2 EZH2 SUZ12 HSALNG0029661 LOC440982 ZIC1 ZIC4 ZIC4-AS1 ENSG00000243620
GH03J147419 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.7 -2.0 -2012 0.2 NRF1 MYC USF1 HDAC2 EZH2 SMC3 MXI1 YY1 E2F6 POU2F2 HSALNG0029661 ZIC1 ZIC4 ZIC4-AS1 ENSG00000243620 LOC440982
GH03J147424 Enhancer 0.7 FANTOM5 dbSUPER 0.7 +3.2 3194 0.2 RNF2 CTBP2 EZH2 SUZ12 ZIC1 ZIC4-AS1 ZIC4 ENSG00000243620 LOC440982 piR-38579-034
GH03J147449 Enhancer 0.8 UCNEbase Ensembl 0.3 +28.6 28575 0.2 EP300 GATA3 GATA2 POU5F1 NANOG PKNOX1 POLR2A piR-57134-084 LOC440982 ZIC1 piR-35031-033
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC440982 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC440982 Gene

Genomic Locations for LOC440982 Gene
chr3:147,421,327-147,510,335
(GRCh38/hg38)
Size:
89,009 bases
Orientation:
Plus strand
chr3:147,137,609-147,139,986
(GRCh37/hg19)
Size:
2,378 bases
Orientation:
Plus strand

Genomic View for LOC440982 Gene

Genes around LOC440982 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440982 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440982 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440982 Gene

Proteins for LOC440982 Gene

Post-translational modifications for LOC440982 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440982 Gene

Domains & Families for LOC440982 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC440982 Gene

Function for LOC440982 Gene

Phenotypes From GWAS Catalog for LOC440982 Gene

Phenotypes for LOC440982 Gene

genes like me logo Genes that share phenotypes with LOC440982: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440982 Gene

Localization for LOC440982 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440982 Gene

Pathways & Interactions for LOC440982 Gene

PathCards logo

SuperPathways for LOC440982 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC440982 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC440982 Gene

Drugs & Compounds for LOC440982 Gene

No Compound Related Data Available

Transcripts for LOC440982 Gene

mRNA/cDNA for LOC440982 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440982 Gene

No ASD Table

Relevant External Links for LOC440982 Gene

GeneLoc Exon Structure for
LOC440982

Expression for LOC440982 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC440982

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440982 Gene

Orthologs for LOC440982 Gene

No data available for Orthologs and Evolution for LOC440982 Gene

Paralogs for LOC440982 Gene

No data available for Paralogs for LOC440982 Gene

Variants for LOC440982 Gene

Additional dbSNP identifiers (rs#s) for LOC440982 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC440982 Gene

Variant ID Type Subtype PubMed ID
dgv8635n54 CNV loss 21841781
esv2664930 CNV deletion 23128226
esv3562687 CNV deletion 23714750
esv3598114 CNV loss 21293372
nsv460885 CNV loss 19166990
nsv470938 CNV loss 18288195
nsv523198 CNV gain 19592680
nsv822285 CNV gain 20364138
nsv954490 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC440982 Gene

Disorders for LOC440982 Gene

No disorders were found for LOC440982 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440982 Gene

Publications for LOC440982 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

No data available for Mastermind for LOC440982 Gene

Products for LOC440982 Gene

Sources for LOC440982 Gene