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Aliases for LOC440934 Gene

Subcategory (RNA class) for LOC440934 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC440934 Gene

  • Uncharacterized LOC440934 3
  • AC010980.1 5

External Ids for LOC440934 Gene

Previous GeneCards Identifiers for LOC440934 Gene

  • GC02P223008
  • GC02P222889
  • GC02P223181

Summaries for LOC440934 Gene

GeneCards Summary for LOC440934 Gene

LOC440934 (Uncharacterized LOC440934) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC440934 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC440934 Gene

Genomics for LOC440934 Gene

GeneHancer (GH) Regulatory Elements for LOC440934 Gene

Promoters and enhancers for LOC440934 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I222423 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.7 +112.0 111989 5.4 HDGF PKNOX1 SMAD1 SIN3A FEZF1 GLIS2 ZNF213 ZNF143 ATF7 RUNX3 SGPP2 LOC440934 ENSG00000261428 NANOGP2
GH02I222448 Enhancer 0.9 FANTOM5 Ensembl ENCODE 11.4 +134.9 134898 0.7 ZNF488 ZNF623 SGPP2 LOC440934 NANOGP2
GH02I223041 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.9 +728.7 728658 3.6 ATF1 SMAD1 ARNT NCOA2 TCF12 ZNF766 FOS ATF7 ZNF592 SMARCA4 GC02P223042 GC02P223043 LOC440934
GH02I222398 Enhancer 0.5 ENCODE 10.7 +84.6 84592 0.9 USF1 RFX1 POLR2A HLF RFX5 SGPP2 LOC440934 RNU6-619P GC02P222405 PAX3
GH02I222549 Enhancer 0.3 ENCODE 11.1 +235.0 235024 0.2 ZBTB17 LOC440934 RNU6-619P GC02M222558 GAPDHP49 SGPP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC440934 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC440934 gene promoter:

Genomic Locations for LOC440934 Gene

Genomic Locations for LOC440934 Gene
chr2:222,314,143-222,352,989
(GRCh38/hg38)
Size:
38,847 bases
Orientation:
Plus strand
chr2:223,182,996-223,186,441
(GRCh37/hg19)

Genomic View for LOC440934 Gene

Genes around LOC440934 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440934 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440934 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440934 Gene

Proteins for LOC440934 Gene

Post-translational modifications for LOC440934 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440934 Gene

Domains & Families for LOC440934 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC440934 Gene

Function for LOC440934 Gene

Phenotypes From GWAS Catalog for LOC440934 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440934 Gene

Localization for LOC440934 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440934 Gene

Pathways & Interactions for LOC440934 Gene

SuperPathways for LOC440934 Gene

No Data Available

Interacting Proteins for LOC440934 Gene

Gene Ontology (GO) - Biological Process for LOC440934 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC440934 Gene

Drugs & Compounds for LOC440934 Gene

No Compound Related Data Available

Transcripts for LOC440934 Gene

Unigene Clusters for LOC440934 Gene

Uncharacterized LOC440934:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440934 Gene

No ASD Table

Relevant External Links for LOC440934 Gene

GeneLoc Exon Structure for
LOC440934

Expression for LOC440934 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC440934 Gene

mRNA differential expression in normal tissues according to GTEx for LOC440934 Gene

This gene is overexpressed in Brain - Hippocampus (x5.1), Brain - Frontal Cortex (BA9) (x4.2), and Brain - Anterior cingulate cortex (BA24) (x4.2).

SOURCE GeneReport for Unigene cluster for LOC440934 Gene:

Hs.732732
genes like me logo Genes that share expression patterns with LOC440934: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440934 Gene

Orthologs for LOC440934 Gene

Evolution for LOC440934 Gene

ENSEMBL:
Gene Tree for LOC440934 (if available)
TreeFam:
Gene Tree for LOC440934 (if available)

No data available for Orthologs for LOC440934 Gene

Paralogs for LOC440934 Gene

No data available for Paralogs for LOC440934 Gene

Variants for LOC440934 Gene

Sequence variations from dbSNP and Humsavar for LOC440934 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000017225 -- 222,319,632(+) G/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000069372 -- 222,339,895(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000072180 -- 222,319,369(+) C/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000174523 -- 222,332,859(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000371163 -- 222,345,518(+) C/A genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC440934 Gene

Disorders for LOC440934 Gene

Additional Disease Information for LOC440934

No disorders were found for LOC440934 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC440934 Gene

Publications for LOC440934 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC440934 Gene

Sources for LOC440934 Gene

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