Aliases for LOC440742 Gene

Subcategory (RNA class) for LOC440742 Gene

ncRNA

Aliases for LOC440742 Gene

  • Uncharacterized LOC440742 3

External Ids for LOC440742 Gene

Previous GeneCards Identifiers for LOC440742 Gene

  • GC01P240553
  • GC01P242294
  • GC01P244229

Summaries for LOC440742 Gene

GeneCards Summary for LOC440742 Gene

LOC440742 (Uncharacterized LOC440742) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC440742 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC440742 Gene

Genomics for LOC440742 Gene

GeneHancer (GH) Regulatory Elements for LOC440742 Gene

Promoters and enhancers for LOC440742 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J244064 Enhancer 0.7 Ensembl dbSUPER 500.7 +0.3 287 0.2 FOXA2 RXRA HNF4A TEAD3 FOXA1 FOXA3 SP1 CEBPA ENSG00000279774 LOC440742 ENSG00000286486
GH01J244062 Enhancer 0.7 Ensembl dbSUPER 500.7 -1.5 -1513 1.4 ZNF316 MITF TBX21 RNF2 USF1 ELF1 CBX8 ENSG00000279774 LOC440742 ZBTB18
GH01J244065 Enhancer 1.3 UCNEbase Ensembl ENCODE dbSUPER 0.7 +2.2 2214 3.4 FOS TCF7 FOXA2 SPI1 JUND IKZF1 FOSL2 RAD21 RXRA MAX EFCAB2 ENSG00000279774 LOC440742 ENSG00000286486
GH01J244073 Enhancer 0.8 ENCODE dbSUPER 0.4 +10.4 10428 2.1 RCOR1 MEF2B ZFHX2 POU2F2 EBF1 IKZF1 SCRT1 ZNF768 TBX21 SMARCA4 LOC440742 ENSG00000286486 ENSG00000229960
GH01J244068 Enhancer 0.3 Ensembl 0.7 +4.3 4287 0.2 REST FOS LOC440742 ENSG00000286486 ENSG00000229960
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC440742 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC440742 gene promoter:
  • FOXD3
  • GATA-1
  • GATA-2
  • GR
  • GR-alpha
  • IRF-7A
  • Nkx2-5
  • Pax-5
  • POU2F1a

Genomic Locations for LOC440742 Gene

Genomic Locations for LOC440742 Gene
chr1:244,064,614-244,065,102
(GRCh38/hg38)
Size:
489 bases
Orientation:
Plus strand
chr1:244,227,632-244,231,211
(GRCh37/hg19)
Size:
3,580 bases
Orientation:
Plus strand

Genomic View for LOC440742 Gene

Genes around LOC440742 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440742 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440742 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440742 Gene

Proteins for LOC440742 Gene

Post-translational modifications for LOC440742 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440742 Gene

Domains & Families for LOC440742 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC440742 Gene

Function for LOC440742 Gene

Phenotypes for LOC440742 Gene

genes like me logo Genes that share phenotypes with LOC440742: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440742 Gene

Localization for LOC440742 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440742 Gene

Pathways & Interactions for LOC440742 Gene

PathCards logo

SuperPathways for LOC440742 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC440742 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC440742 Gene

Drugs & Compounds for LOC440742 Gene

No Compound Related Data Available

Transcripts for LOC440742 Gene

mRNA/cDNA for LOC440742 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC440742

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440742 Gene

No ASD Table

Relevant External Links for LOC440742 Gene

GeneLoc Exon Structure for
LOC440742

Expression for LOC440742 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC440742 Gene

mRNA expression in normal human tissues for LOC440742 Gene

mRNA differential expression in normal tissues according to GTEx for LOC440742 Gene

This gene is overexpressed in Brain - Cerebellum (x24.5) and Brain - Cerebellar Hemisphere (x23.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC440742

SOURCE GeneReport for Unigene cluster for LOC440742 Gene:

Hs.629644
genes like me logo Genes that share expression patterns with LOC440742: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440742 Gene

Orthologs for LOC440742 Gene

No data available for Orthologs and Evolution for LOC440742 Gene

Paralogs for LOC440742 Gene

No data available for Paralogs for LOC440742 Gene

Variants for LOC440742 Gene

Additional dbSNP identifiers (rs#s) for LOC440742 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC440742 Gene

Disorders for LOC440742 Gene

No disorders were found for LOC440742 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440742 Gene

Publications for LOC440742 Gene

No publications were found for LOC440742 Gene.

No data available for Mastermind for LOC440742 Gene

Products for LOC440742 Gene

Sources for LOC440742 Gene