Aliases for LOC440300 Gene

Aliases for LOC440300 Gene

  • Chondroitin Sulfate Proteoglycan 4 Pseudogene 3

External Ids for LOC440300 Gene

Previous GeneCards Identifiers for LOC440300 Gene

  • GC15P082642
  • GC15P082633
  • GC15P084842
  • GC15P084856
  • GC15P084860

Summaries for LOC440300 Gene

GeneCards Summary for LOC440300 Gene

LOC440300 (Chondroitin Sulfate Proteoglycan 4 Pseudogene) is a Pseudogene.

Additional gene information for LOC440300 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC440300 Gene

Genomics for LOC440300 Gene

GeneHancer (GH) Regulatory Elements for LOC440300 Gene

Promoters and enhancers for LOC440300 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J084195 Enhancer 0.7 Ensembl 0.7 +4.2 4229 1 ZNF217 CTCF ZBTB10 REST ZNF274 SMC3 SUPT5H ZNF189 ZNF654 ZNF2 piR-48466-002 DNM1P51 UBE2Q2L ENSG00000259683 ENSG00000259774 CSPG4P12 LOC440300 piR-41333-002 CSPG4P11
GH15J084197 Enhancer 0.3 Ensembl 0.4 +5.3 5253 0.2 POLR2G piR-48466-002 piR-41333-002 LOC440300 CSPG4P11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC440300 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC440300 gene promoter:
  • AML1a
  • ARP-1
  • C/EBPalpha
  • CHOP-10
  • NF-kappaB
  • NF-kappaB1
  • p53
  • Pbx1a
  • PPAR-gamma1
  • RelA

Genomic Locations for LOC440300 Gene

Genomic Locations for LOC440300 Gene
chr15:84,191,848-84,209,294
(GRCh38/hg38)
Size:
17,447 bases
Orientation:
Plus strand
chr15:84,860,600-84,878,046
(GRCh37/hg19)
Size:
17,447 bases
Orientation:
Plus strand

Genomic View for LOC440300 Gene

Genes around LOC440300 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440300 Gene

Proteins for LOC440300 Gene

Post-translational modifications for LOC440300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440300 Gene

Domains & Families for LOC440300 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC440300 Gene

Function for LOC440300 Gene

Phenotypes From GWAS Catalog for LOC440300 Gene

genes like me logo Genes that share phenotypes with LOC440300: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440300 Gene

Localization for LOC440300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440300 Gene

Pathways & Interactions for LOC440300 Gene

PathCards logo

SuperPathways for LOC440300 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC440300 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC440300 Gene

Drugs & Compounds for LOC440300 Gene

No Compound Related Data Available

Transcripts for LOC440300 Gene

mRNA/cDNA for LOC440300 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440300 Gene

No ASD Table

Relevant External Links for LOC440300 Gene

GeneLoc Exon Structure for
LOC440300

Expression for LOC440300 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC440300 Gene

mRNA expression in normal human tissues for LOC440300 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC440300

SOURCE GeneReport for Unigene cluster for LOC440300 Gene:

Hs.546565
genes like me logo Genes that share expression patterns with LOC440300: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440300 Gene

Orthologs for LOC440300 Gene

No data available for Orthologs and Evolution for LOC440300 Gene

Paralogs for LOC440300 Gene

No data available for Paralogs for LOC440300 Gene

Variants for LOC440300 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC440300 Gene

Variant ID Type Subtype PubMed ID
dgv2638n100 CNV gain 25217958
dgv2639n100 CNV loss 25217958
dgv2640n100 CNV gain 25217958
dgv2641n100 CNV loss 25217958
dgv2642n100 CNV gain+loss 25217958
dgv752e212 CNV loss 25503493
esv2672879 CNV deletion 23128226
esv2760048 CNV gain+loss 17122850
esv2761880 CNV gain 21179565
esv29092 CNV gain+loss 19812545
esv3345420 CNV duplication 20981092
esv3352307 CNV duplication 20981092
esv3569809 CNV gain 25503493
nsv1037229 CNV gain+loss 25217958
nsv1038297 CNV gain+loss 25217958
nsv1076413 CNV duplication 25765185
nsv1077809 CNV duplication 25765185
nsv1078384 CNV duplication 25765185
nsv1129329 OTHER inversion 24896259
nsv1132413 CNV duplication 24896259
nsv1141271 CNV duplication 24896259
nsv1151235 CNV duplication 26484159
nsv428310 CNV gain+loss 18775914
nsv518289 CNV loss 19592680
nsv833076 CNV loss 17160897
nsv833077 CNV gain+loss 17160897
nsv9290 CNV gain+loss 18304495
nsv976960 CNV duplication 23825009
nsv977803 CNV duplication 23825009
nsv984148 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC440300 Gene

Disorders for LOC440300 Gene

No disorders were found for LOC440300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440300 Gene

Publications for LOC440300 Gene

No publications were found for LOC440300 Gene.

No data available for Mastermind for LOC440300 Gene

Products for LOC440300 Gene

Sources for LOC440300 Gene