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Aliases for LOC440180 Gene

Aliases for LOC440180 Gene

  • Zinc Finger CCHC-Type Containing 7 Pseudogene 3

External Ids for LOC440180 Gene

Previous GeneCards Identifiers for LOC440180 Gene

  • GC14P056577
  • GC14P057507

Summaries for LOC440180 Gene

GeneCards Summary for LOC440180 Gene

LOC440180 (Zinc Finger CCHC-Type Containing 7 Pseudogene) is a Pseudogene.

Additional gene information for LOC440180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC440180 Gene

Genomics for LOC440180 Gene

GeneHancer (GH) Regulatory Elements for LOC440180 Gene

Promoters and enhancers for LOC440180 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J057007 Enhancer 1.7 VISTA UCNEbase Ensembl 0.3 -31.4 -31449 3.9 CC2D1A CBFA2T2 GTF2F1 CDC5L TRIM24 EGR1 SMARCA4 MTA1 GMEB1 DPF2 ENSG00000286257 LOC440180 OTX2-AS1
GH14J056998 Enhancer 0.8 Ensembl ENCODE 0.3 -42.7 -42748 3 PRDM1 FOSL2 CREB1 CTBP1 DPF2 FOS JUND SMARCE1 ENSG00000286257 LOC440180 OTX2-AS1
GH14J057021 Enhancer 0.4 Ensembl 0.4 -18.5 -18547 1.4 USF1 USF2 LOC440180 ENSG00000286257 OTX2-AS1
GH14J057038 Enhancer 0.2 Ensembl 0.7 -2.1 -2147 1 LOC440180 ENSG00000286257 OTX2-AS1
GH14J057029 Enhancer 0.3 Ensembl 0.4 -11.2 -11247 1.2 NANOG LOC440180 ENSG00000286257 OTX2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC440180 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC440180 gene promoter:
  • ATF6
  • C/EBPalpha
  • E47
  • ER-alpha
  • GATA-1
  • Hand1
  • HTF
  • LCR-F1
  • NF-1
  • Sox5

Genomic Locations for LOC440180 Gene

Genomic Locations for LOC440180 Gene
chr14:57,040,848-57,042,701
(GRCh38/hg38)
Size:
1,854 bases
Orientation:
Plus strand
chr14:57,507,603-57,509,222
(GRCh37/hg19)
Size:
1,620 bases
Orientation:
Plus strand

Genomic View for LOC440180 Gene

Genes around LOC440180 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440180 Gene

Proteins for LOC440180 Gene

Post-translational modifications for LOC440180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440180 Gene

Domains & Families for LOC440180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC440180 Gene

Function for LOC440180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440180 Gene

Localization for LOC440180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440180 Gene

Pathways & Interactions for LOC440180 Gene

PathCards logo

SuperPathways for LOC440180 Gene

No Data Available

Interacting Proteins for LOC440180 Gene

Gene Ontology (GO) - Biological Process for LOC440180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC440180 Gene

Drugs & Compounds for LOC440180 Gene

No Compound Related Data Available

Transcripts for LOC440180 Gene

mRNA/cDNA for LOC440180 Gene

(1) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440180 Gene

No ASD Table

Relevant External Links for LOC440180 Gene

GeneLoc Exon Structure for
LOC440180

Expression for LOC440180 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC440180 Gene

mRNA differential expression in normal tissues according to GTEx for LOC440180 Gene

This gene is overexpressed in Testis (x23.0), Skin - Not Sun Exposed (Suprapubic) (x10.3), and Pancreas (x5.6).
genes like me logo Genes that share expression patterns with LOC440180: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440180 Gene

Orthologs for LOC440180 Gene

No data available for Orthologs and Evolution for LOC440180 Gene

Paralogs for LOC440180 Gene

No data available for Paralogs for LOC440180 Gene

Variants for LOC440180 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC440180 Gene

Disorders for LOC440180 Gene

No disorders were found for LOC440180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440180 Gene

Publications for LOC440180 Gene

No publications were found for LOC440180 Gene.

No data available for External Links for LOC440180 Gene

Products for LOC440180 Gene

Sources for LOC440180 Gene

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