Aliases for LOC440084 Gene

Data sources for LOC440084 Gene:

RNA type for LOC440084 Gene

lncRNA

Aliases for LOC440084 Gene

External Ids for LOC440084 Gene

Previous GeneCards Identifiers for LOC440084 Gene

  • GC12M011474
  • GC12U901249
  • GC12M011476
  • GC12M011602
  • GC12M011753
  • GC12M011940
  • GC12M012306
  • GC12M013891
  • GC12M014414

Summaries for LOC440084 Gene

GeneCards Summary for LOC440084 Gene

LOC440084 (Uncharacterized LOC440084) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC440084 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC440084 Gene

Genomics for LOC440084 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC440084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J011486 Enhancer 1 Ensembl ENCODE 250.7 +0.3 282 1.3 BCLAF1 ZNF654 CEBPA BRCA1 CTCF REST CEBPB ZNF592 DEK TRIM22 ENSG00000255790 LOC440084 TAS2R18P lnc-ETV6-4 PRB2 lnc-PRB2-2 PRB1
GH12J011482 Enhancer 0.3 Ensembl ENCODE 0.7 +3.6 3563 1.9 HIGD1AP8 lnc-ETV6-4 TAS2R18P LINC01252 ENSG00000255790 LOC440084 PRB2 lnc-PRB2-2 PRB1
GH12J011460 Enhancer 0.3 Ensembl ENCODE 0.3 +25.8 25841 1.8 piR-32559-080 piR-46662-103 LOC440084 ENSG00000255790 PRB2 lnc-PRB2-2 PRB1
GH12J011495 Enhancer 0.2 FANTOM5 0.4 -9.0 -9004 0.1 HSALNG0089316 RNU7-60P LINC01252 LOC440084 PRB2 lnc-PRB2-2 PRB1
GH12J011455 Enhancer 0.2 Ensembl 0.3 +31.0 31041 1 PRB1 piR-46662-103 lnc-ETV6-5 LOC440084 ENSG00000255790 lnc-PRB2-2 PRB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC440084 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC440084 Gene

Latest Assembly
chr12:11,399,381-11,486,742
(GRCh38/hg38)
Size:
87,362 bases
Orientation:
Minus strand

Previous Assembly
chr12:11,583,144-11,639,612
(GRCh37/hg19 by Entrez Gene)
Size:
56,469 bases
Orientation:
Minus strand

Genomic View for LOC440084 Gene

Genes around LOC440084 on UCSC Golden Path with GeneCards custom track
LOC440084 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC440084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440084 Gene

Proteins for LOC440084 Gene

Post-translational modifications for LOC440084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440084 Gene

Domains & Families for LOC440084 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC440084 Gene

Function for LOC440084 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440084 Gene

Localization for LOC440084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440084 Gene

Pathways & Interactions for LOC440084 Gene

PathCards logo

SuperPathways for LOC440084 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC440084 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC440084 Gene

Drugs & Compounds for LOC440084 Gene

No Compound Related Data Available

Transcripts for LOC440084 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC440084 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC4405_9606 lncRNA 721 1

RefSeq: NR_148969,

URS0001BE60C4_9606 lncRNA 1825 1

LncBook: HSALNT0185659,

URS0001BCD422_9606 lncRNA 1782 1

LncBook: HSALNT0185661,

URS0001BF03A7_9606 lncRNA 1648 1

LncBook: HSALNT0185660,

URS0001BEBE46_9606 lncRNA 562 1

LncBook: HSALNT0185658,

LOC440084 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC440084 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440084 Gene

No ASD Table

Relevant External Links for LOC440084 Gene

GeneLoc Exon Structure for
LOC440084

Expression for LOC440084 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC440084

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440084 Gene

Orthologs for LOC440084 Gene

No data available for Orthologs and Evolution for LOC440084 Gene

Paralogs for LOC440084 Gene

No data available for Paralogs for LOC440084 Gene

Variants for LOC440084 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC440084 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC440084 Gene

Disorders for LOC440084 Gene

No disorders were found for LOC440084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440084 Gene

Publications for LOC440084 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC440084 Gene

Products for LOC440084 Gene

Sources for LOC440084 Gene