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Aliases for LOC440084 Gene

Subcategory (RNA class) for LOC440084 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC440084 Gene

  • Uncharacterized LOC440084 3
  • AC078950.1 5

External Ids for LOC440084 Gene

Previous GeneCards Identifiers for LOC440084 Gene

  • GC12M011474
  • GC12U901249
  • GC12M011476
  • GC12M011602
  • GC12M011753

Summaries for LOC440084 Gene

GeneCards Summary for LOC440084 Gene

LOC440084 (Uncharacterized LOC440084) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC440084 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC440084 Gene

Genomics for LOC440084 Gene

GeneHancer (GH) Regulatory Elements for LOC440084 Gene

Promoters and enhancers for LOC440084 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I011486 Enhancer 0.8 ENCODE 550.8 -0.1 -84 0.2 ATF1 BATF ZNF2 IRF4 BRCA1 RAD21 RFX5 ZNF213 ARID2 ZNF143 LOC440084 ENSG00000256981 IQSEC3P2 PRB2
GH12I011482 Enhancer 0.3 ENCODE 0.8 +3.5 3499 1.9 JUN HIGD1AP8 ENSG00000256981 LINC01252 LOC440084 PRB2
GH12I011495 Enhancer 0.2 FANTOM5 0.4 -9.1 -9068 0.1 LINC01252 RNU7-60P IQSEC3P2 LOC440084 PRB2
GH12I011460 Enhancer 0.2 ENCODE 0.3 +25.6 25634 0.8 GC12P011468 GC12M012110 LOC440084 PRB2
GH12I011429 Enhancer 0.2 FANTOM5 0.2 +57.0 56975 0.3 TAS2R50 TAS2R42 TAS2R43 GC12M012110 PRB1 LOC440084 PRB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC440084 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC440084 Gene

Genomic Locations for LOC440084 Gene
chr12:11,399,381-11,486,678
(GRCh38/hg38)
Size:
87,298 bases
Orientation:
Minus strand

Genomic View for LOC440084 Gene

Genes around LOC440084 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC440084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC440084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC440084 Gene

Proteins for LOC440084 Gene

Post-translational modifications for LOC440084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC440084 Gene

Domains & Families for LOC440084 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC440084 Gene

Function for LOC440084 Gene

Phenotypes From GWAS Catalog for LOC440084 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC440084 Gene

Localization for LOC440084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC440084 Gene

Pathways & Interactions for LOC440084 Gene

SuperPathways for LOC440084 Gene

No Data Available

Interacting Proteins for LOC440084 Gene

Gene Ontology (GO) - Biological Process for LOC440084 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC440084 Gene

Drugs & Compounds for LOC440084 Gene

No Compound Related Data Available

Transcripts for LOC440084 Gene

mRNA/cDNA for LOC440084 Gene

(3) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC440084 Gene

No ASD Table

Relevant External Links for LOC440084 Gene

GeneLoc Exon Structure for
LOC440084

Expression for LOC440084 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC440084 Gene

Orthologs for LOC440084 Gene

Evolution for LOC440084 Gene

ENSEMBL:
Gene Tree for LOC440084 (if available)
TreeFam:
Gene Tree for LOC440084 (if available)

No data available for Orthologs for LOC440084 Gene

Paralogs for LOC440084 Gene

No data available for Paralogs for LOC440084 Gene

Variants for LOC440084 Gene

Sequence variations from dbSNP and Humsavar for LOC440084 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000295969 -- 11,432,106(-) T/C intron_variant
rs1000856977 -- 11,434,506(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000902822 -- 11,433,446(-) C/T intron_variant, non_coding_transcript_variant
rs1001251796 -- 11,433,150(-) C/A intron_variant, non_coding_transcript_variant
rs1001266643 -- 11,437,403(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC440084 Gene

Disorders for LOC440084 Gene

No disorders were found for LOC440084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC440084 Gene

Publications for LOC440084 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LOC440084 Gene

Sources for LOC440084 Gene

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