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Aliases for LOC414300 Gene

Subcategory (RNA class) for LOC414300 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC414300 Gene

  • Uncharacterized LOC414300 3

External Ids for LOC414300 Gene

Previous GeneCards Identifiers for LOC414300 Gene

  • GC12U900577

Summaries for LOC414300 Gene

GeneCards Summary for LOC414300 Gene

LOC414300 (Uncharacterized LOC414300) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC414300 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC414300 Gene

Genomics for LOC414300 Gene

GeneHancer (GH) Regulatory Elements for LOC414300 Gene

Promoters and enhancers for LOC414300 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J105106 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 1000.6 -1.5 -1465 5.2 SREBF1 MNT SP1 ZFX CBFA2T2 ELF3 SIX5 GTF2F1 MLLT1 ZNF687 WASHC4 ENSG00000257999 LOC414300 APPL2 KCCAT198 GC12P105154
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC414300 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC414300 Gene

Genomic Locations for LOC414300 Gene
chr12:105,102,472-105,107,642
(GRCh38/hg38)
Size:
5,171 bases
Orientation:
Minus strand

Genomic View for LOC414300 Gene

Genes around LOC414300 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC414300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC414300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC414300 Gene

Proteins for LOC414300 Gene

Post-translational modifications for LOC414300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC414300 Gene

Domains & Families for LOC414300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC414300 Gene

Function for LOC414300 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC414300 Gene

Localization for LOC414300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC414300 Gene

Pathways & Interactions for LOC414300 Gene

PathCards logo

SuperPathways for LOC414300 Gene

No Data Available

Interacting Proteins for LOC414300 Gene

Gene Ontology (GO) - Biological Process for LOC414300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC414300 Gene

Drugs & Compounds for LOC414300 Gene

No Compound Related Data Available

Transcripts for LOC414300 Gene

mRNA/cDNA for LOC414300 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC414300 Gene

Uncharacterized LOC414300:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC414300 Gene

No ASD Table

Relevant External Links for LOC414300 Gene

GeneLoc Exon Structure for
LOC414300

Expression for LOC414300 Gene

SOURCE GeneReport for Unigene cluster for LOC414300 Gene:

Hs.191637
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC414300 Gene

Orthologs for LOC414300 Gene

No data available for Orthologs and Evolution for LOC414300 Gene

Paralogs for LOC414300 Gene

No data available for Paralogs for LOC414300 Gene

Variants for LOC414300 Gene

Sequence variations from dbSNP and Humsavar for LOC414300 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1221246198 uncertain-significance, not specified 105,107,798(-) G/T upstream_transcript_variant
rs1000591039 -- 105,106,969(-) T/C non_coding_transcript_variant
rs1001284330 -- 105,107,754(-) C/A/G/T upstream_transcript_variant
rs1001302904 -- 105,107,623(-) C/T non_coding_transcript_variant
rs1001837291 -- 105,108,824(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC414300 Gene

Variant ID Type Subtype PubMed ID
nsv832505 CNV gain 17160897
nsv832506 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC414300 Gene

Disorders for LOC414300 Gene

No disorders were found for LOC414300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC414300 Gene

Publications for LOC414300 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC414300 Gene

Products for LOC414300 Gene

Sources for LOC414300 Gene

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