Aliases for LOC403312 Gene

Subcategory (RNA class) for LOC403312 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC403312 Gene

  • Putative Uncharacterized Protein MGC39545 3
  • Novel Transcript, Antisense To FEZ1 5
  • Lnc-PKNOX2-2 165
  • AP000708.1 5

External Ids for LOC403312 Gene

Summaries for LOC403312 Gene

GeneCards Summary for LOC403312 Gene

LOC403312 (Putative Uncharacterized Protein MGC39545) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC403312 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC403312 Gene

Genomics for LOC403312 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC403312 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J125493 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.2 214 2.9 TEAD4 ZNF692 LARP7 ZIC2 ZSCAN4 POLR2A PATZ1 ZNF600 ZNF341 ZNF561 FEZ1 LOC403312 piR-41306-052 PUS3 DDX25 PKNOX2 EI24 STT3A-AS1
GH11J125467 Enhancer 0.5 dbSUPER 11.5 -26.4 -26443 1.6 CEBPA ATF4 HNF4A ATF3 KDM1A HNF4G CEBPG ZNF384 LOC403312 FEZ1 STT3A-AS1 PATE4 lnc-ACRV1-1 EI24 PKNOX2
GH11J125470 Enhancer 0.4 FANTOM5 dbSUPER 11.2 -24.7 -24650 0.1 FEZ1 LOC403312 STT3A-AS1 PKNOX2 DDX25 lnc-ACRV1-1 EI24
GH11J125457 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -37.0 -37014 1.6 REST IKZF1 NR2C1 CBX3 NFE2 HDGF ZSCAN29 ZNF316 NR2C2 MAFG FEZ1 PKNOX2 DDX25 lnc-ACRV1-1 LOC403312 EI24 STT3A-AS1
GH11J125481 Enhancer 0.6 Ensembl dbSUPER 0.4 -12.2 -12213 3.2 CTBP1 NR2F2 IKZF1 ESRRA CBFA2T3 FEZ1 PUS3 LOC403312 lnc-ACRV1-1 EI24 STT3A-AS1 PKNOX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC403312 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC403312

Genomic Locations for LOC403312 Gene

Genomic Locations for LOC403312 Gene
chr11:125,495,214-125,499,528
(GRCh38/hg38)
Size:
4,315 bases
Orientation:
Plus strand
chr11:125,365,110-125,369,424
(GRCh37/hg19)
Size:
4,315 bases
Orientation:
Plus strand

Genomic View for LOC403312 Gene

Genes around LOC403312 on UCSC Golden Path with GeneCards custom track
LOC403312 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC403312 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC403312 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC403312 Gene

Proteins for LOC403312 Gene

Post-translational modifications for LOC403312 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC403312 Gene

Domains & Families for LOC403312 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC403312 Gene

Function for LOC403312 Gene

Phenotypes for LOC403312 Gene

GenomeRNAi human phenotypes for LOC403312:
genes like me logo Genes that share phenotypes with LOC403312: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC403312 Gene

Localization for LOC403312 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC403312 Gene

Pathways & Interactions for LOC403312 Gene

PathCards logo

SuperPathways for LOC403312 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC403312 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC403312 Gene

Drugs & Compounds for LOC403312 Gene

No Compound Related Data Available

Transcripts for LOC403312 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC403312 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D63ED_9606 lncRNA 3423 2

Ensembl: ENST00000527818 (view in UCSC) ,

LNCipedia: lnc-PKNOX2-2:1,

URS0000EEAC88_9606 lncRNA 3421 1

RefSeq: NR_164146,

URS0000EEACC2_9606 lncRNA 3152 1

RefSeq: NR_164147,

LOC403312 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC403312 Gene

2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC403312

Alternative Splicing Database (ASD) splice patterns (SP) for LOC403312 Gene

No ASD Table

Relevant External Links for LOC403312 Gene

GeneLoc Exon Structure for
LOC403312

Expression for LOC403312 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC403312 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC403312

genes like me logo Genes that share expression patterns with LOC403312: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC403312 Gene

Orthologs for LOC403312 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC403312 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 97 (a)
OneToOne
Species where no ortholog for LOC403312 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC403312 Gene

ENSEMBL:
Gene Tree for LOC403312 (if available)
TreeFam:
Gene Tree for LOC403312 (if available)

Paralogs for LOC403312 Gene

No data available for Paralogs for LOC403312 Gene

Variants for LOC403312 Gene

Additional dbSNP identifiers (rs#s) for LOC403312 Gene

Variation tolerance for LOC403312 Gene

Gene Damage Index Score: 5.31; 70.56% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC403312 Gene

Disorders for LOC403312 Gene

No disorders were found for LOC403312 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC403312 Gene

Publications for LOC403312 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC403312 Gene

Products for LOC403312 Gene

Sources for LOC403312 Gene