Aliases for LOC401864 Gene

Aliases for LOC401864 Gene

  • Chloride Intracellular Channel 1 Pseudogene 3

External Ids for LOC401864 Gene

Previous GeneCards Identifiers for LOC401864 Gene

  • GC16M086250
  • GC16M085025

Summaries for LOC401864 Gene

GeneCards Summary for LOC401864 Gene

LOC401864 (Chloride Intracellular Channel 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC401864 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC401864 Gene

Genomics for LOC401864 Gene

GeneHancer (GH) Regulatory Elements for LOC401864 Gene

Promoters and enhancers for LOC401864 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086430 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +3.4 3414 3 EZH2 FOS RNU1-103P LOC401864 HSALNG0113292
GH16J086395 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +38.2 38175 3.6 POLR2A SP7 CEBPB CHD2 JUN RCOR1 JUND MAX MAZ MXI1 HSALNG0113292 LOC401864
GH16J086386 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +45.5 45506 7.4 ZBTB6 POLR2A ZNF217 MNT CREB1 RXRA SMARCC1 CTBP1 CEBPB CHD2 LINC00917 FOXF1 FOXC2 HSALNG0113292 LOC401864
GH16J086424 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +10.5 10497 1.2 SMARCC2 GABPA STAT1 USF2 FOS LOC401864 HSALNG0113292
GH16J086414 Enhancer 0.4 Ensembl ENCODE 0.4 +19.9 19897 1.6 NR2F2 LINC00917 LOC401864 HSALNG0113292
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC401864 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC401864 Gene

Genomic Locations for LOC401864 Gene
chr16:86,434,844-86,435,498
(GRCh38/hg38)
Size:
655 bases
Orientation:
Minus strand
chr16:86,468,436-86,469,490
(GRCh37/hg19)
Size:
1,055 bases
Orientation:
Minus strand

Genomic View for LOC401864 Gene

Genes around LOC401864 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC401864 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC401864 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC401864 Gene

Proteins for LOC401864 Gene

Post-translational modifications for LOC401864 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC401864 Gene

Domains & Families for LOC401864 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC401864 Gene

Function for LOC401864 Gene

Phenotypes From GWAS Catalog for LOC401864 Gene

Phenotypes for LOC401864 Gene

GenomeRNAi human phenotypes for LOC401864:
genes like me logo Genes that share phenotypes with LOC401864: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC401864 Gene

Localization for LOC401864 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC401864 Gene

Pathways & Interactions for LOC401864 Gene

PathCards logo

SuperPathways for LOC401864 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC401864 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC401864 Gene

Drugs & Compounds for LOC401864 Gene

No Compound Related Data Available

Transcripts for LOC401864 Gene

mRNA/cDNA for LOC401864 Gene

(1) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC401864 Gene

No ASD Table

Relevant External Links for LOC401864 Gene

GeneLoc Exon Structure for
LOC401864

Expression for LOC401864 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC401864 Gene

mRNA differential expression in normal tissues according to GTEx for LOC401864 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x9.6), Bladder (x9.2), Colon - Sigmoid (x6.3), Esophagus - Muscularis (x5.3), Prostate (x4.6), and Stomach (x4.2).
genes like me logo Genes that share expression patterns with LOC401864: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC401864 Gene

Orthologs for LOC401864 Gene

No data available for Orthologs and Evolution for LOC401864 Gene

Paralogs for LOC401864 Gene

No data available for Paralogs for LOC401864 Gene

Variants for LOC401864 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC401864 Gene

Disorders for LOC401864 Gene

No disorders were found for LOC401864 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC401864 Gene

Publications for LOC401864 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 56
  2. Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber MJ … Krauss RM (PloS one 2010) 3 56

No data available for External Links for LOC401864 Gene

Products for LOC401864 Gene

Sources for LOC401864 Gene