Aliases for LOC401478 Gene

Subcategory (RNA class) for LOC401478 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC401478 Gene

  • Uncharacterized LOC401478 3

External Ids for LOC401478 Gene

Summaries for LOC401478 Gene

GeneCards Summary for LOC401478 Gene

LOC401478 (Uncharacterized LOC401478) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC401478 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC401478 Gene

Genomics for LOC401478 Gene

GeneHancer (GH) Regulatory Elements for LOC401478 Gene

Promoters and enhancers for LOC401478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J138080 Enhancer 0.6 Ensembl ENCODE 0.4 +7.3 7274 2.2 NANOG CHD7 SP1 ZNF143 ENSG00000253288 piR-33847 LOC401478 RF00017-7336
GH08J138114 Enhancer 0.5 Ensembl 0.3 -26.3 -26250 0.5 CTCF TEAD4 RAD21 SMC3 SPI1 ELF3 ELF1 TRIM22 GABPA LOC401478 piR-48799-140
GH08J138076 Enhancer 0.4 Ensembl 0.4 +11.5 11485 0.6 TEAD4 HDAC2 TCF12 ENSG00000253288 piR-33847 LOC401478 RF00017-7336
GH08J137934 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.1 +152.0 151985 6.8 CTCF EP300 JUND RELA MEF2C RCOR1 REST TRIM22 BCL11A TCF12 ENSG00000253288 piR-54987-141 piR-57801-026 ENSG00000254361 RF00017-7336 LOC401478
GH08J138083 Enhancer 0.3 Ensembl 0.4 +5.1 5085 0.2 EZH2 ENSG00000253288 piR-33847 LOC401478 RF00017-7336
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC401478 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC401478

Genomic Locations for LOC401478 Gene

Genomic Locations for LOC401478 Gene
chr8:137,809,675-138,088,186
(GRCh38/hg38)
Size:
278,512 bases
Orientation:
Minus strand

Genomic View for LOC401478 Gene

Genes around LOC401478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC401478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC401478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC401478 Gene

Proteins for LOC401478 Gene

Post-translational modifications for LOC401478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC401478 Gene

Domains & Families for LOC401478 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC401478 Gene

Function for LOC401478 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC401478 Gene

Localization for LOC401478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC401478 Gene

Pathways & Interactions for LOC401478 Gene

PathCards logo

SuperPathways for LOC401478 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC401478 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC401478 Gene

Drugs & Compounds for LOC401478 Gene

No Compound Related Data Available

Transcripts for LOC401478 Gene

mRNA/cDNA for LOC401478 Gene

1 RNACentral transcripts :
2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC401478 Gene

No ASD Table

Relevant External Links for LOC401478 Gene

GeneLoc Exon Structure for
LOC401478

Expression for LOC401478 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC401478 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC401478

genes like me logo Genes that share expression patterns with LOC401478: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC401478 Gene

Orthologs for LOC401478 Gene

No data available for Orthologs and Evolution for LOC401478 Gene

Paralogs for LOC401478 Gene

No data available for Paralogs for LOC401478 Gene

Variants for LOC401478 Gene

Additional dbSNP identifiers (rs#s) for LOC401478 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC401478 Gene

Disorders for LOC401478 Gene

No disorders were found for LOC401478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC401478 Gene

Publications for LOC401478 Gene

  1. Genome-wide association study identifies genetic determinants of urine PCA3 levels in men. (PMID: 23555189) Chen Z … Xu J (Neoplasia (New York, N.Y.) 2013) 3 54
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54
  3. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 54
  4. Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism. (PMID: 18762592) van den Oord EJ … Rujescu D (Archives of general psychiatry 2008) 3 54

No data available for Mastermind for LOC401478 Gene

Products for LOC401478 Gene

Sources for LOC401478 Gene