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Aliases for LOC401312 Gene

Subcategory (RNA class) for LOC401312 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC401312 Gene

  • Uncharacterized LOC401312 3
  • AC002480.4 5

External Ids for LOC401312 Gene

Previous GeneCards Identifiers for LOC401312 Gene

  • GC07M022353
  • GC07M022384
  • GC07U901781

Summaries for LOC401312 Gene

GeneCards Summary for LOC401312 Gene

LOC401312 (Uncharacterized LOC401312) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC401312 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC401312 Gene

Genomics for LOC401312 Gene

GeneHancer (GH) Regulatory Elements for LOC401312 Gene

Promoters and enhancers for LOC401312 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J022659 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.7 +3.0 3010 5.3 ATF1 YY1 EGR1 ZNF143 FOS ATF7 CAVIN1 ZBTB11 CEBPB ZNF592 STEAP1B ENSG00000225541 ENSG00000179428 IL6 TRA2A CLK2P1 LOC401312 GC07P022403
GH07J022665 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 -2.1 -2059 3.8 ATF1 CLOCK ARNT ZNF766 FOS ATF7 CAVIN1 NCOA1 REST ZNF592 ENSG00000179428 STEAP1B IL6 TRA2A LOC401312 GC07P022719 GC07P022403
GH07J022671 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.2 -7197 3.2 FOXA2 NFIB NEUROD1 SIN3A RARA FOS RCOR1 CEBPB NFYC MIER2 STEAP1B ENSG00000179428 IL6 GPNMB ENSG00000226329 LOC401312 GC07P022719 GC07P022403
GH07J022675 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -11.0 -11023 3 HDAC1 NFRKB FEZF1 BATF IRF4 ZNF121 EGR1 RUNX3 JUNB ELF1 ENSG00000179428 STEAP1B IL6 ENSG00000226329 LOC401312 GC07P022719 GC07P022403
GH07J022695 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.9 -31946 3.4 HDAC1 HDGF PKNOX1 NFRKB ZBTB40 TCF12 ETV6 ATF7 RUNX3 CREM ENSG00000179428 IL6 TRA2A EEF1A1P6 GC07P022719 LOC401312 GC07P022403
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC401312 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC401312 Gene

Genomic Locations for LOC401312 Gene
chr7:22,649,960-22,665,533
(GRCh38/hg38)
Size:
15,574 bases
Orientation:
Minus strand

Genomic View for LOC401312 Gene

Genes around LOC401312 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC401312 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC401312 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC401312 Gene

Proteins for LOC401312 Gene

  • Protein details for LOC401312 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A4D149-A4D149_HUMAN
    Recommended name:
    Hypothetical gene supported by BC039682
    Protein Accession:
    A4D149

    Protein attributes for LOC401312 Gene

    Size:
    119 amino acids
    Molecular mass:
    13328 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC401312 Gene

Post-translational modifications for LOC401312 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC401312 Gene

Domains & Families for LOC401312 Gene

Protein Domains for LOC401312 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC401312 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC401312: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC401312 Gene

Function for LOC401312 Gene

Phenotypes From GWAS Catalog for LOC401312 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC401312 Gene

Localization for LOC401312 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC401312 Gene

Pathways & Interactions for LOC401312 Gene

SuperPathways for LOC401312 Gene

No Data Available

Interacting Proteins for LOC401312 Gene

Gene Ontology (GO) - Biological Process for LOC401312 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC401312 Gene

Drugs & Compounds for LOC401312 Gene

No Compound Related Data Available

Transcripts for LOC401312 Gene

mRNA/cDNA for LOC401312 Gene

(6) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC401312 Gene

Uncharacterized LOC401312:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC401312 Gene

No ASD Table

Relevant External Links for LOC401312 Gene

GeneLoc Exon Structure for
LOC401312

Expression for LOC401312 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC401312 Gene

SOURCE GeneReport for Unigene cluster for LOC401312 Gene:

Hs.583393
genes like me logo Genes that share expression patterns with LOC401312: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC401312 Gene

Orthologs for LOC401312 Gene

Evolution for LOC401312 Gene

ENSEMBL:
Gene Tree for LOC401312 (if available)
TreeFam:
Gene Tree for LOC401312 (if available)

No data available for Orthologs for LOC401312 Gene

Paralogs for LOC401312 Gene

No data available for Paralogs for LOC401312 Gene

Variants for LOC401312 Gene

Sequence variations from dbSNP and Humsavar for LOC401312 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000155742 -- 22,651,053(-) A/G/T non_coding_transcript_variant
rs1000170114 -- 22,664,789(-) A/C intron_variant
rs1000817390 -- 22,653,833(-) C/A intron_variant
rs1000830981 -- 22,667,212(-) T/G upstream_transcript_variant
rs1000857629 -- 22,660,972(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC401312 Gene

Variant ID Type Subtype PubMed ID
nsv527614 CNV loss 19592680
nsv7393 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC401312 Gene

Disorders for LOC401312 Gene

Additional Disease Information for LOC401312

No disorders were found for LOC401312 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC401312 Gene

Publications for LOC401312 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC401312 Gene

Sources for LOC401312 Gene

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