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Aliases for LOC401040 Gene
Aliases for LOC401040 Gene
External Ids for LOC401040 Gene
- NCBI Entrez Gene: 401040
- Ensembl: ENSG00000196758
Summaries for LOC401040 Gene
GeneCards Summary for LOC401040 Gene
LOC401040 (Uncharacterized LOC401040) is a Protein Coding gene.
Additional gene information for LOC401040 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC401040 Gene
Genomics for LOC401040 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC401040 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J239579 | Enhancer | 0.5 | Ensembl | 250.7 | +1.6 | 1600 | 1.4 | SMAD4 RARA EZH2 NR2F6 HNRNPL | LOC401040 TWIST2 HSALNG0023521 NDUFA10 | |
| GH02J239576 | Enhancer | 0.3 | Ensembl dbSUPER | 250.7 | -0.8 | -843 | 0.7 | LOC401040 lnc-HDAC4-5 HDAC4 | ||
| GH02J239601 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 13.1 | +27.1 | 27099 | 9.2 | ZNF623 MAFF SPI1 MAX EZH2 CEBPB MAFK CEBPG | LOC401040 HSALNG0023521 ENSG00000227459 NDUFA10 | |
| GH02J239622 | Promoter/Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 11.3 | +46.8 | 46848 | 5.3 | CEBPB ZBTB40 CREB1 | ENSG00000227459 LOC401040 HSALNG0023521 NDUFA10 | |
| GH02J239716 | Enhancer | 0.9 | Ensembl ENCODE CraniofacialAtlas | 11.2 | +139.3 | 139280 | 2.4 | PLRG1 BCL6 TCF7L2 RCOR1 SOX6 TRIM22 PHB2 CREB1 NR2F2 | LOC401040 HSALNG0023528 HSALNG0023529 NDUFA10 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC401040 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC401040 Gene
Latest Assembly
- chr2:239,578,301-239,586,094
- (GRCh38/hg38)
- Size:
- 7,794 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:240,499,995-240,507,788
- (GRCh37/hg19 by Ensembl)
- Size:
- 7,794 bases
- Orientation:
- Plus strand
Genomic View for LOC401040 Gene
Genes around LOC401040 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q37.3 by Entrez Gene
- 2q37.3 by Ensembl
LOC401040 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC401040 Gene
Proteins for LOC401040 Gene
Post-translational modifications for LOC401040 Gene
No Post-translational modifications
Other Protein References for LOC401040 Gene
- REFSEQ proteins:
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC401040
- Origene Custom Protein Services for LOC401040
Assay products for research
No data available for DME Specific Peptides for LOC401040 Gene
Domains & Families for LOC401040 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC401040 Gene
Function for LOC401040 Gene
Phenotypes From GWAS Catalog for LOC401040 Gene
Phenotypes for LOC401040 Gene
- GenomeRNAi human phenotypes for LOC401040:
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Browse CRISPR knockouts for LOC401040
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC401040
miRNA products for research
Inhibitory RNAs for research
- Origene shrna products in human, mouse, rat for LOC401040
- Browse OriGene Inhibitory RNA Products For LOC401040
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC401040
Clone products for research
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC401040
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC401040 Gene
Localization for LOC401040 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC401040 Gene
Transcripts for LOC401040 Gene
mRNA/cDNA for LOC401040 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000358775 3700 nts (view in UCSC)
- 1 RNACentral transcripts :
- 1 LNCipedia transcripts :
CRISPR products for research
- Browse CRISPR knockouts for LOC401040
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC401040
miRNA products for research
Inhibitory RNAs for research
- Origene shrna products in human, mouse, rat for LOC401040
- Browse OriGene Inhibitory RNA Products For LOC401040
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC401040
Clone products for research
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC401040
Relevant External Links for LOC401040 Gene
- GeneLoc Exon Structure for
- LOC401040
Expression for LOC401040 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC401040
Primer products for research
-
OriGene qPCR primer pairs for LOC401040
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC401040 Gene
Orthologs for LOC401040 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | -- 31 |
|
OneToOne |
- Species where no ortholog for LOC401040 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for LOC401040 Gene
No data available for Paralogs for LOC401040 Gene
Variants for LOC401040 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Gene Damage Index Score:
6.49;
77.54% of all genes are more intolerant (likely to be disease-causing)
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC401040 Gene
Disorders for LOC401040 Gene
Additional Disease Information for LOC401040
- Open Targets Platform
- Open Targets Platform
No disorders were found for LOC401040 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC401040 Gene
Publications for LOC401040 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC401040 Gene
Products for LOC401040 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC401040
- Origene Custom Protein Services for LOC401040
- Origene shrna products in human, mouse, rat for LOC401040
- Browse OriGene Inhibitory RNA Products For LOC401040
- OriGene qPCR primer pairs for LOC401040
- Browse CRISPR knockouts for LOC401040
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC401040
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for LOC401040 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for LOC401040 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for LOC401040 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for LOC401040 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for LOC401040
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC401040
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC401040
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC401040
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC401040
Sources for LOC401040 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB