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Aliases for LOC400927 Gene

Aliases for LOC400927 Gene

  • TPTE And PTEN Homologous Inositol Lipid Phosphatase Pseudogene 3

External Ids for LOC400927 Gene

Previous GeneCards Identifiers for LOC400927 Gene

  • GC22M036975
  • GC22M037057
  • GC22M037085
  • GC22M038740
  • GC22M021706
  • GC22M038386
  • GC22M038503
  • GC22M038811
  • GC22M039931
  • GC22M040619
  • GC22M041061
  • GC22M041462

Summaries for LOC400927 Gene

GeneCards Summary for LOC400927 Gene

LOC400927 (TPTE And PTEN Homologous Inositol Lipid Phosphatase Pseudogene) is a Pseudogene.

Additional gene information for LOC400927 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400927 Gene

Genomics for LOC400927 Gene

GeneHancer (GH) Regulatory Elements for LOC400927 Gene

Promoters and enhancers for LOC400927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I038392 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.8 +2.6 2614 7 SIN3A FEZF1 ZNF2 POLR2B ZNF143 KLF13 SP3 MXD4 KAT8 CBX8 CSNK1E GGA1 ENSG00000244627 NPTXR ENSG00000228274 LOC400927 LOC400927-CSNK1E ENSG00000229955
GH22I038387 Enhancer 0.8 Ensembl dbSUPER 0.4 +9.8 9825 3 SRF MAFG DPF2 RELA ZNF316 IKZF1 SCRT2 PRDM10 KDM1A IKZF2 ENSG00000229955 KCNJ4 KDELR3 ENSG00000244627 LOC400927-CSNK1E LOC400927
GH22I038353 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +45.1 45148 1.2 HDGF RB1 ZFP64 KLF5 RAD21 RARA ZNF121 GLIS2 ZNF143 SMARCA5 ENSG00000244627 PIR43912 GC22M042205 GC22M042475 GC22M042313 CSNK1E LOC400927-CSNK1E LOC400927
GH22I038373 Enhancer 0.7 ENCODE dbSUPER 0.3 +24.2 24159 2.5 ZNF687 NFIC IKZF1 EBF1 RELA GC22M042205 GC22M042313 GC22M042475 PIR43912 ENSG00000244627 LOC400927 LOC400927-CSNK1E CSNK1E
GH22I038390 Enhancer 0.5 dbSUPER 0.4 +7.5 7450 1.4 SMARCE1 SMARCA5 DDX20 MNT MLLT1 GGA1 KCNJ4 KDELR3 ENSG00000244627 ENSG00000229955 LOC400927-CSNK1E LOC400927
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC400927 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC400927 gene promoter:

Genomic Locations for LOC400927 Gene

Genomic Locations for LOC400927 Gene
chr22:38,344,665-38,398,926
(GRCh38/hg38)
Size:
54,262 bases
Orientation:
Minus strand
chr22:38,740,670-38,794,931
(GRCh37/hg19)

Genomic View for LOC400927 Gene

Genes around LOC400927 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400927 Gene

Proteins for LOC400927 Gene

Post-translational modifications for LOC400927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400927 Gene

Domains & Families for LOC400927 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC400927 Gene

Function for LOC400927 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400927 Gene

Localization for LOC400927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400927 Gene

Pathways & Interactions for LOC400927 Gene

SuperPathways for LOC400927 Gene

No Data Available

Interacting Proteins for LOC400927 Gene

Gene Ontology (GO) - Biological Process for LOC400927 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400927 Gene

Drugs & Compounds for LOC400927 Gene

No Compound Related Data Available

Transcripts for LOC400927 Gene

mRNA/cDNA for LOC400927 Gene

(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:

Unigene Clusters for LOC400927 Gene

TPTE and PTEN homologous inositol lipid phosphatase pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400927 Gene

No ASD Table

Relevant External Links for LOC400927 Gene

GeneLoc Exon Structure for
LOC400927

Expression for LOC400927 Gene

SOURCE GeneReport for Unigene cluster for LOC400927 Gene:

Hs.720223
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400927 Gene

Orthologs for LOC400927 Gene

No data available for Orthologs and Evolution for LOC400927 Gene

Paralogs for LOC400927 Gene

No data available for Paralogs for LOC400927 Gene

Variants for LOC400927 Gene

Sequence variations from dbSNP and Humsavar for LOC400927 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000051195 -- 38,381,662(-) C/T intron_variant
rs1000089697 -- 38,366,770(-) G/A intron_variant
rs1000150560 -- 38,358,244(-) A/G intron_variant
rs1000204854 -- 38,358,000(-) G/C intron_variant
rs1000486758 -- 38,364,008(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC400927 Gene

Variant ID Type Subtype PubMed ID
esv29271 CNV loss 19812545
nsv1072210 CNV deletion 25765185
nsv1072638 CNV deletion 25765185
nsv1126631 CNV deletion 24896259
nsv1143410 CNV deletion 24896259
nsv834195 CNV loss 17160897
nsv964629 CNV duplication 23825009
nsv979674 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC400927 Gene

Disorders for LOC400927 Gene

Additional Disease Information for LOC400927

No disorders were found for LOC400927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC400927 Gene

Publications for LOC400927 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for LOC400927 Gene

Sources for LOC400927 Gene

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