Aliases for LOC400867 Gene

Subcategory (RNA class) for LOC400867 Gene


Quality Score for this RNA gene is


Aliases for LOC400867 Gene

  • Uncharacterized LOC400867 3
  • NONHSAG032847 94
  • HSALNG0133092 169
  • Lnc-ERG-9 170

External Ids for LOC400867 Gene

Summaries for LOC400867 Gene

GeneCards Summary for LOC400867 Gene

LOC400867 (Uncharacterized LOC400867) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400867 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400867 Gene

Genomics for LOC400867 Gene

GeneHancer (GH) Regulatory Elements for LOC400867 Gene

Promoters and enhancers for LOC400867 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038938 Enhancer 0.7 Ensembl ENCODE 750.6 +0.2 229 1.6 CSDE1 RFX1 CTBP1 POLR2A RFX3 ZNF512B BMI1 NCOA3 ZBTB7B ZMYM3 LOC400867 RF00017-3709 ENSG00000205622
GH21J038936 Enhancer 0.3 Ensembl 750.6 +1.8 1828 0.8 ZNF18 LOC400867 RF00017-3709 ENSG00000205622
GH21J038906 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +27.0 26988 9.6 PPP1R10 E2F8 ZNF785 SREBF1 FOXA1 MLX RBPJ POLR2A TCF7L2 USF2 HMGN1 LCA5L RNF6P1 MYL6P2 DSCR10 ENSG00000270835 DSCR4 DSCR4-IT1 PSMG1 DSCR8
GH21J038925 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +12.4 12371 1.6 MAFK ZNF548 POLR2A FOS ZNF623 NR2F2 JUND ATF2 KDM1A MAFF RPSAP64 RF00017-3709 LOC400867 ENSG00000205622 lnc-ETS2-5
GH21J038918 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +17.3 17260 5.9 RBPJ TCF7L2 NR2F6 ATF1 HLF RAD21 ZNF280D ELF3 SP1 TFE3 RPSAP64 ERG LCA5L RF00017-3709 LOC400867 lnc-ETS2-5 ENSG00000205622
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400867 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400867 Gene

Genomic Locations for LOC400867 Gene
61,139 bases
Minus strand

Genomic View for LOC400867 Gene

Genes around LOC400867 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400867 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400867 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400867 Gene

Proteins for LOC400867 Gene

Post-translational modifications for LOC400867 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400867 Gene

Domains & Families for LOC400867 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400867 Gene

Function for LOC400867 Gene

Phenotypes From GWAS Catalog for LOC400867 Gene

Phenotypes for LOC400867 Gene

genes like me logo Genes that share phenotypes with LOC400867: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400867 Gene

Localization for LOC400867 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400867 Gene

Pathways & Interactions for LOC400867 Gene

PathCards logo

SuperPathways for LOC400867 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400867 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC400867 Gene

Drugs & Compounds for LOC400867 Gene

No Compound Related Data Available

Transcripts for LOC400867 Gene

mRNA/cDNA for LOC400867 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(6) RNACentral transcripts :
(4) NONCODE transcripts :
(5) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400867 Gene

No ASD Table

Relevant External Links for LOC400867 Gene

GeneLoc Exon Structure for

Expression for LOC400867 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC400867 Gene

genes like me logo Genes that share expression patterns with LOC400867: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400867 Gene

Orthologs for LOC400867 Gene

No data available for Orthologs and Evolution for LOC400867 Gene

Paralogs for LOC400867 Gene

No data available for Paralogs for LOC400867 Gene

Variants for LOC400867 Gene

Sequence variations from dbSNP and Humsavar for LOC400867 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000019157 -- 38,924,684(-) C/G/T intron_variant
rs1000024853 -- 38,903,107(-) A/G intron_variant
rs1000190825 -- 38,934,404(-) G/A intron_variant
rs1000213092 -- 38,896,115(-) T/C intron_variant
rs1000220743 -- 38,898,822(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC400867 Gene

Variant ID Type Subtype PubMed ID
esv2596489 CNV insertion 19546169
esv2723420 CNV deletion 23290073
esv3422109 CNV duplication 20981092
esv3647010 CNV loss 21293372
nsv1110760 CNV insertion 24896259
nsv1116924 CNV deletion 24896259
nsv1127896 CNV deletion 24896259
nsv587477 CNV loss 21841781
nsv587478 CNV loss 21841781
nsv587479 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC400867 Gene

Disorders for LOC400867 Gene

No disorders were found for LOC400867 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400867 Gene

Publications for LOC400867 Gene

  1. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A … Kocher T (Journal of clinical periodontology 2013) 3 56
  2. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova IG … Poland GA (Vaccine 2012) 3 56
  3. Molecular reclassification of Crohn's disease by cluster analysis of genetic variants. (PMID: 20886065) Cleynen I … Vermeire S (PloS one 2010) 3 56
  4. Genetic risk profiling and prediction of disease course in Crohn's disease patients. (PMID: 19422935) Henckaerts L … Vermeire S (Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 2009) 3 56
  5. Confirmation of multiple Crohn's disease susceptibility loci in a large Dutch-Belgian cohort. (PMID: 19174780) Weersma RK … Vermeire S (The American journal of gastroenterology 2009) 3 56

No data available for External Links for LOC400867 Gene

Products for LOC400867 Gene

Sources for LOC400867 Gene