Aliases for LOC400867 Gene

Subcategory (RNA class) for LOC400867 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC400867 Gene

  • Uncharacterized LOC400867 3
  • NONHSAG032847.2 91
  • HSALNG0133092 164
  • Lnc-ERG-9 165

External Ids for LOC400867 Gene

Summaries for LOC400867 Gene

GeneCards Summary for LOC400867 Gene

LOC400867 (Uncharacterized LOC400867) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400867 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400867 Gene

Genomics for LOC400867 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC400867 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J038938 Enhancer 0.7 Ensembl ENCODE 600.7 +0.2 229 1.6 RFX1 POLR2A RFX3 ZNF512B BMI1 CTBP1 NCOA3 ZBTB7B ESRRA RFX5 LOC400867 RF00017-3711 ENSG00000205622 ETS2 PSMG1
GH21J038936 Enhancer 0.3 Ensembl 600.7 +1.8 1828 0.8 ZNF18 LOC400867 RF00017-3711 ENSG00000205622 ETS2 PSMG1
GH21J038906 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +27.0 26988 9.6 ARHGAP35 CEBPG HNRNPL CREB1 GATAD2A ZBTB33 ARID3A TEAD4 YBX1 PRDM10 HMGN1 LCA5L PSMG1 LINC00114 lnc-ETS2-5 RF00017-3711 LOC400867 ENSG00000205622 ETS2
GH21J038925 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +12.4 12371 1.6 JUND FOS ZNF623 NR2F2 BHLHE40 MAFK ZMYM3 KDM1A ATF2 MAFF RPSAP64 RF00017-3711 LOC400867 lnc-ETS2-5 ENSG00000205622 ETS2 PSMG1
GH21J038944 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.3 -7272 2.2 CTCF TEAD4 PRDM10 ZIC2 EZH2 ZNF341 NFE2 WT1 ZNF189 PRDM6 LOC400867 ENSG00000205622 ETS2 PSMG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400867 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400867 Gene

Genomic Locations for LOC400867 Gene
chr21:38,877,291-38,938,429
(GRCh38/hg38)
Size:
61,139 bases
Orientation:
Minus strand

Genomic View for LOC400867 Gene

Genes around LOC400867 on UCSC Golden Path with GeneCards custom track
LOC400867 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC400867 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400867 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400867 Gene

Proteins for LOC400867 Gene

Post-translational modifications for LOC400867 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400867 Gene

Domains & Families for LOC400867 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400867 Gene

Function for LOC400867 Gene

Phenotypes From GWAS Catalog for LOC400867 Gene

Phenotypes for LOC400867 Gene

genes like me logo Genes that share phenotypes with LOC400867: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400867 Gene

Localization for LOC400867 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400867 Gene

Pathways & Interactions for LOC400867 Gene

PathCards logo

SuperPathways for LOC400867 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400867 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400867 Gene

Drugs & Compounds for LOC400867 Gene

No Compound Related Data Available

Transcripts for LOC400867 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400867 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057DA8A_9606 lncRNA 3823 3

RefSeq: NR_120405,

LNCipedia: lnc-ERG-9:3,

NONCODE: NONHSAT082128.2,

URS00008B2B47_9606 lncRNA 3825 2

LNCipedia: lnc-ERG-9:2,

NONCODE: NONHSAT082129.2,

URS00009AF2BA_9606 lncRNA 1009 2

LncBook: HSALNT0273630,

NONCODE: NONHSAT191475.1,

URS000055DAEC_9606 lncRNA 407 2

LNCipedia: lnc-ERG-9:8,

NONCODE: NONHSAT082134.2,

URS000077EB00_9606 lncRNA 461 1

LNCipedia: lnc-ERG-9:7,

LOC400867 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400867 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400867 Gene

No ASD Table

Relevant External Links for LOC400867 Gene

GeneLoc Exon Structure for
LOC400867

Expression for LOC400867 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400867 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400867

genes like me logo Genes that share expression patterns with LOC400867: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400867 Gene

Orthologs for LOC400867 Gene

No data available for Orthologs and Evolution for LOC400867 Gene

Paralogs for LOC400867 Gene

No data available for Paralogs for LOC400867 Gene

Variants for LOC400867 Gene

Additional dbSNP identifiers (rs#s) for LOC400867 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC400867 Gene

Variant ID Type Subtype PubMed ID
esv2596489 CNV insertion 19546169
esv2723420 CNV deletion 23290073
esv3422109 CNV duplication 20981092
esv3647010 CNV loss 21293372
nsv1110760 CNV insertion 24896259
nsv1116924 CNV deletion 24896259
nsv1127896 CNV deletion 24896259
nsv587477 CNV loss 21841781
nsv587478 CNV loss 21841781
nsv587479 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC400867 Gene

Disorders for LOC400867 Gene

No disorders were found for LOC400867 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400867 Gene

Publications for LOC400867 Gene

  1. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A … Kocher T (Journal of clinical periodontology 2013) 3
  2. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova IG … Poland GA (Vaccine 2012) 3
  3. Molecular reclassification of Crohn's disease by cluster analysis of genetic variants. (PMID: 20886065) Cleynen I … Vermeire S (PloS one 2010) 3
  4. Confirmation of multiple Crohn's disease susceptibility loci in a large Dutch-Belgian cohort. (PMID: 19174780) Weersma RK … Vermeire S (The American journal of gastroenterology 2009) 3
  5. Genetic risk profiling and prediction of disease course in Crohn's disease patients. (PMID: 19422935) Henckaerts L … Vermeire S (Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 2009) 3

No data available for Mastermind for LOC400867 Gene

Products for LOC400867 Gene

Sources for LOC400867 Gene