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LOC400867 Gene(RNA Gene)

Uncharacterized LOC400867

GCID:
GC21M038877
GIFtS:
10
Genes Participants
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Aliases for LOC400867 Gene

Subcategory (RNA class) for LOC400867 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC400867 Gene

  • Uncharacterized LOC400867 3

External Ids for LOC400867 Gene

Summaries for LOC400867 Gene

GeneCards Summary for LOC400867 Gene

LOC400867 (Uncharacterized LOC400867) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC400867 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400867 Gene

Genomics for LOC400867 Gene

GeneHancer (GH) Regulatory Elements for LOC400867 Gene

Promoters and enhancers for LOC400867 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J038938 Enhancer 0.8 Ensembl ENCODE 600.7 +0.1 128 1.4 CSDE1 RFX1 POLR2A CTBP1 ZNF512B RFX3 BMI1 NCOA3 ZBTB7B ZMYM3 LOC400867 ENSG00000205622 RPSAP64
GH21J038936 Enhancer 0.3 Ensembl 600.7 +1.8 1828 0.8 ZNF18 LOC400867 ENSG00000205622 RPSAP64
GH21J038930 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.1 7109 1.5 CEBPA CEBPB NR2F2 RXRA POLR2A MYC MAX ETS2 LOC400867 ENSG00000205622 RPSAP64
GH21J038906 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +27.0 26988 9.6 ZNF473 MTA3 ZNF652 ELF3 MLLT1 GTF2F1 NFIB ZSCAN21 NCOA3 CDC5L HMGN1 LCA5L PSMG1 LINC00114 RPSAP64 LOC400867 ENSG00000205622
GH21J038925 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +12.4 12371 1.6 MAFK ZNF548 POLR2A FOS ZNF623 NR2F2 JUND ATF2 KDM1A MAFF RPSAP64 LOC400867 ENSG00000205622
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400867 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400867 Gene

Genomic Locations for LOC400867 Gene
chr21:38,877,291-38,938,429
(GRCh38/hg38)
Size:
61,139 bases
Orientation:
Minus strand

Genomic View for LOC400867 Gene

Genes around LOC400867 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400867 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400867 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC400867 Gene

Proteins for LOC400867 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC400867 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400867 Gene

Domains & Families for LOC400867 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC400867 Gene

Function for LOC400867 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC400867 Gene

Phenotypes for LOC400867 Gene

GenomeRNAi human phenotypes for LOC400867:
genes like me logo Genes that share phenotypes with LOC400867: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC400867

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400867 Gene

Localization for LOC400867 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400867 Gene

Pathways & Interactions for LOC400867 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LOC400867 Gene

No Data Available

Interacting Proteins for LOC400867 Gene

Gene Ontology (GO) - Biological Process for LOC400867 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400867 Gene

Drugs & Compounds for LOC400867 Gene

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  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LOC400867 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC400867 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) RNA Central transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC400867

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400867 Gene

No ASD Table

Relevant External Links for LOC400867 Gene

GeneLoc Exon Structure for
LOC400867

Expression for LOC400867 Gene

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  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400867 Gene

Orthologs for LOC400867 Gene

No data available for Orthologs and Evolution for LOC400867 Gene

Paralogs for LOC400867 Gene

No data available for Paralogs for LOC400867 Gene

Variants for LOC400867 Gene

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  1. SNP Genotyping and Copy Number Assay
VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LOC400867 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000019157 -- 38,924,684(-) C/G/T intron_variant
rs1000024853 -- 38,903,107(-) A/G intron_variant
rs1000190825 -- 38,934,404(-) G/A intron_variant
rs1000213092 -- 38,896,115(-) T/C intron_variant
rs1000220743 -- 38,898,822(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC400867 Gene

Variant ID Type Subtype PubMed ID
esv2596489 CNV insertion 19546169
esv2723420 CNV deletion 23290073
esv3422109 CNV duplication 20981092
esv3647010 CNV loss 21293372
nsv1110760 CNV insertion 24896259
nsv1116924 CNV deletion 24896259
nsv1127896 CNV deletion 24896259
nsv587477 CNV loss 21841781
nsv587478 CNV loss 21841781
nsv587479 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC400867 Gene

Disorders for LOC400867 Gene

No disorders were found for LOC400867 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400867 Gene

Publications for LOC400867 Gene

  1. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A … Kocher T (Journal of clinical periodontology 2013) 3 58
  2. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova IG … Poland GA (Vaccine 2012) 3 58
  3. Molecular reclassification of Crohn's disease by cluster analysis of genetic variants. (PMID: 20886065) Cleynen I … Vermeire S (PloS one 2010) 3 58
  4. Confirmation of multiple Crohn's disease susceptibility loci in a large Dutch-Belgian cohort. (PMID: 19174780) Weersma RK … Vermeire S (The American journal of gastroenterology 2009) 3 58
  5. Genetic risk profiling and prediction of disease course in Crohn's disease patients. (PMID: 19422935) Henckaerts L … Vermeire S (Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association 2009) 3 58

No data available for External Links for LOC400867 Gene

Products for LOC400867 Gene

Sources for LOC400867 Gene

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