Aliases for LOC400748 Gene

Subcategory (RNA class) for LOC400748 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC400748 Gene

  • Uncharacterized LOC400748 3
  • Novel Transcript 5
  • HSALNG0002203 167
  • Lnc-ZCCHC17-2 168
  • NONHSAG000884 92
  • AL445235.1 5

External Ids for LOC400748 Gene

Previous GeneCards Identifiers for LOC400748 Gene

  • GC01P030826
  • GC01P030958
  • GC01U901375
  • GC01P031332

Summaries for LOC400748 Gene

GeneCards Summary for LOC400748 Gene

LOC400748 (Uncharacterized LOC400748) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400748 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400748 Gene

Genomics for LOC400748 Gene

GeneHancer (GH) Regulatory Elements for LOC400748 Gene

Promoters and enhancers for LOC400748 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400748 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400748 Gene

Genomic Locations for LOC400748 Gene
chr1:30,858,158-30,860,254
(GRCh38/hg38)
Size:
2,097 bases
Orientation:
Plus strand
chr1:31,331,005-31,333,101
(GRCh37/hg19)
Size:
2,097 bases
Orientation:
Plus strand

Genomic View for LOC400748 Gene

Genes around LOC400748 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400748 Gene

Proteins for LOC400748 Gene

Post-translational modifications for LOC400748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400748 Gene

Domains & Families for LOC400748 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400748 Gene

Function for LOC400748 Gene

Phenotypes From GWAS Catalog for LOC400748 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400748 Gene

Localization for LOC400748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400748 Gene

Pathways & Interactions for LOC400748 Gene

PathCards logo

SuperPathways for LOC400748 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC400748 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400748 Gene

Drugs & Compounds for LOC400748 Gene

No Compound Related Data Available

Transcripts for LOC400748 Gene

mRNA/cDNA for LOC400748 Gene

1 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400748 Gene

No ASD Table

Relevant External Links for LOC400748 Gene

GeneLoc Exon Structure for
LOC400748

Expression for LOC400748 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400748 Gene

mRNA differential expression in normal tissues according to GTEx for LOC400748 Gene

This gene is overexpressed in Testis (x47.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400748

SOURCE GeneReport for Unigene cluster for LOC400748 Gene:

Hs.639254
genes like me logo Genes that share expression patterns with LOC400748: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400748 Gene

Orthologs for LOC400748 Gene

Evolution for LOC400748 Gene

ENSEMBL:
Gene Tree for LOC400748 (if available)
TreeFam:
Gene Tree for LOC400748 (if available)

No data available for Orthologs for LOC400748 Gene

Paralogs for LOC400748 Gene

No data available for Paralogs for LOC400748 Gene

Variants for LOC400748 Gene

Additional dbSNP identifiers (rs#s) for LOC400748 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400748 Gene

Disorders for LOC400748 Gene

No disorders were found for LOC400748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400748 Gene

Publications for LOC400748 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC400748 Gene

Products for LOC400748 Gene

Sources for LOC400748 Gene