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Aliases for LOC400748 Gene

Subcategory (RNA class) for LOC400748 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC400748 Gene

  • Uncharacterized LOC400748 3
  • Novel Transcript 5
  • AL445235.1 5

External Ids for LOC400748 Gene

Previous GeneCards Identifiers for LOC400748 Gene

  • GC01P030826
  • GC01P030958
  • GC01U901375
  • GC01P031332

Summaries for LOC400748 Gene

GeneCards Summary for LOC400748 Gene

LOC400748 (Uncharacterized LOC400748) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC400748 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400748 Gene

Genomics for LOC400748 Gene

GeneHancer (GH) Regulatory Elements for LOC400748 Gene

Promoters and enhancers for LOC400748 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030858 Enhancer 0.9 Ensembl ENCODE 600.7 +0.9 881 2.5 ZKSCAN8 PRDM10 REST ZSCAN4 PKNOX1 ZNF766 EHMT2 E2F5 MNT TRIM25 LOC400748 SNRNP40 SDC3 MATN1 MATN1-AS1 SNORD103B ENSG00000229447
GH01J030908 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.4 +51.2 51164 4.6 HDGF SP1 CC2D1A CTCF ZNF148 GTF2F1 ZBTB7A SP7 KLF14 SP5 SDC3 LOC400748 MATN1 MATN1-AS1
GH01J030823 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 12.2 -34.0 -33981 2.3 HDGF SP1 ZFX CC2D1A MLLT1 GTF2F1 CSDE1 ZSCAN21 FOS BACH1 LINC01778 SNRNP40 SDC3 LOC400748 ENSG00000229447 COL16A1 MATN1 MATN1-AS1 ENSG00000235790 RN7SKP91
GH01J030790 Promoter/Enhancer 1.3 EPDnew Ensembl 11.1 -66.8 -66757 2 IKZF1 MCM2 PRDM1 ZNF680 MTA1 ZNF300 IKZF2 ZNF512 ZNF776 MTA2 LAPTM5 ENSG00000229447 SNRNP40 PUM1 SDC3 COL16A1 MATN1 MATN1-AS1 ENSG00000235790 LOC400748
GH01J030929 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.7 +71.2 71243 2 CC2D1A CTCF SP7 POLR2A RAD21 RXRA ARID2 IKZF1 ZNF600 ZNF143 MATN1 MATN1-AS1 PUM1 LOC400748 GC01M030951 PIR48625 GC01M030954 RN7SL371P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400748 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400748 Gene

Genomic Locations for LOC400748 Gene
chr1:30,858,158-30,860,254
(GRCh38/hg38)
Size:
2,097 bases
Orientation:
Plus strand
chr1:31,331,005-31,333,101
(GRCh37/hg19)
Size:
2,097 bases
Orientation:
Plus strand

Genomic View for LOC400748 Gene

Genes around LOC400748 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400748 Gene

Proteins for LOC400748 Gene

Post-translational modifications for LOC400748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400748 Gene

Domains & Families for LOC400748 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC400748 Gene

Function for LOC400748 Gene

Phenotypes From GWAS Catalog for LOC400748 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400748 Gene

Localization for LOC400748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400748 Gene

Pathways & Interactions for LOC400748 Gene

PathCards logo

SuperPathways for LOC400748 Gene

No Data Available

Interacting Proteins for LOC400748 Gene

Gene Ontology (GO) - Biological Process for LOC400748 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400748 Gene

Drugs & Compounds for LOC400748 Gene

No Compound Related Data Available

Transcripts for LOC400748 Gene

mRNA/cDNA for LOC400748 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC400748 Gene

Uncharacterized LOC400748:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400748 Gene

No ASD Table

Relevant External Links for LOC400748 Gene

GeneLoc Exon Structure for
LOC400748

Expression for LOC400748 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC400748 Gene

mRNA differential expression in normal tissues according to GTEx for LOC400748 Gene

This gene is overexpressed in Testis (x47.5).

SOURCE GeneReport for Unigene cluster for LOC400748 Gene:

Hs.639254
genes like me logo Genes that share expression patterns with LOC400748: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400748 Gene

Orthologs for LOC400748 Gene

Evolution for LOC400748 Gene

ENSEMBL:
Gene Tree for LOC400748 (if available)
TreeFam:
Gene Tree for LOC400748 (if available)

No data available for Orthologs for LOC400748 Gene

Paralogs for LOC400748 Gene

No data available for Paralogs for LOC400748 Gene

Variants for LOC400748 Gene

Sequence variations from dbSNP and Humsavar for LOC400748 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000240749 -- 30,862,221(+) T/C intron_variant
rs1000357192 -- 30,862,427(+) T/C downstream_transcript_variant
rs1000598459 -- 30,858,207(+) A/C non_coding_transcript_variant
rs1000826133 -- 30,857,512(+) C/T upstream_transcript_variant
rs1001543571 -- 30,860,790(+) T/C non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400748 Gene

Disorders for LOC400748 Gene

No disorders were found for LOC400748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400748 Gene

Publications for LOC400748 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC400748 Gene

Products for LOC400748 Gene

Sources for LOC400748 Gene

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