Aliases for LOC400710 Gene

Subcategory (RNA class) for LOC400710 Gene

lncRNA

Aliases for LOC400710 Gene

  • Uncharacterized LOC400710 3

External Ids for LOC400710 Gene

Summaries for LOC400710 Gene

GeneCards Summary for LOC400710 Gene

LOC400710 (Uncharacterized LOC400710) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400710 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400710 Gene

Genomics for LOC400710 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC400710 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J050050 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 600.7 +0.3 258 1.7 CREB1 PRDM10 ZNF629 RFX1 RFX5 ZNF692 TARDBP ZHX2 FOXA1 ZNF143 ENSG00000204666 ENSG00000269091 ENSG00000267890 LOC400710 VRK3 SIGLEC11 ZNF473 IZUMO2
GH19J050046 Enhancer 0.8 ENCODE 0.7 -3.5 -3530 0.2 CTCF ZBTB33 PRDM1 REST RAD21 IRF2 SOX6 CEBPA ZNF561 ZBTB44 ENSG00000204666 ENSG00000269091 LOC400710 VRK3 ZNF473 IZUMO2
GH19J050039 Enhancer 0.4 ENCODE 0.4 -10.6 -10602 1.2 MAFF HNF4A NR3C1 VRK3 ENSG00000221125 ENSG00000204666 LOC400710 ZNF473 IZUMO2
GH19J050028 Enhancer 0.4 Ensembl 0.4 -20.5 -20489 1.8 ZKSCAN1 NR2F2 POLR2A ZNF121 SIGLEC16 VRK3 ENSG00000221125 ZNF473 LOC400710 ENSG00000204666 IZUMO2
GH19J050031 Enhancer 0.3 Ensembl 0.4 -18.7 -18688 0.2 ZNF24 ZFP91 VRK3 ENSG00000221125 SIGLEC16 ZNF473 ENSG00000204666 LOC400710 IZUMO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400710 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400710 Gene

Genomic Locations for LOC400710 Gene
chr19:50,050,589-50,075,583
(GRCh38/hg38)
Size:
24,995 bases
Orientation:
Plus strand

Genomic View for LOC400710 Gene

Genes around LOC400710 on UCSC Golden Path with GeneCards custom track
LOC400710 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC400710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400710 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400710 Gene

Proteins for LOC400710 Gene

Post-translational modifications for LOC400710 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400710 Gene

Domains & Families for LOC400710 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400710 Gene

Function for LOC400710 Gene

Phenotypes for LOC400710 Gene

genes like me logo Genes that share phenotypes with LOC400710: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400710 Gene

Localization for LOC400710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400710 Gene

Pathways & Interactions for LOC400710 Gene

PathCards logo

SuperPathways for LOC400710 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400710 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400710 Gene

Drugs & Compounds for LOC400710 Gene

No Compound Related Data Available

Transcripts for LOC400710 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400710 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7721A_9606 lncRNA 1527 1

RefSeq: NR_027257,

URS0000A765DB_9606 lncRNA 1112 1

RefSeq: NR_138096,

LOC400710 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400710 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400710 Gene

No ASD Table

Relevant External Links for LOC400710 Gene

GeneLoc Exon Structure for
LOC400710

Expression for LOC400710 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400710

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400710 Gene

Orthologs for LOC400710 Gene

No data available for Orthologs and Evolution for LOC400710 Gene

Paralogs for LOC400710 Gene

No data available for Paralogs for LOC400710 Gene

Variants for LOC400710 Gene

Additional dbSNP identifiers (rs#s) for LOC400710 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400710 Gene

Disorders for LOC400710 Gene

No disorders were found for LOC400710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400710 Gene

Publications for LOC400710 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC400710 Gene

Products for LOC400710 Gene

Sources for LOC400710 Gene