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Aliases for LOC400684 Gene

Subcategory (RNA class) for LOC400684 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC400684 Gene

  • Uncharacterized LOC400684 3
  • LOC400684 Protein 13

External Ids for LOC400684 Gene

Previous GeneCards Identifiers for LOC400684 Gene

  • GC19M037572
  • GC19U900634
  • GC19M032882

Summaries for LOC400684 Gene

GeneCards Summary for LOC400684 Gene

LOC400684 (Uncharacterized LOC400684) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC400684 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400684 Gene

Genomics for LOC400684 Gene

GeneHancer (GH) Regulatory Elements for LOC400684 Gene

Promoters and enhancers for LOC400684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032403 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 -0.3 -349 4.5 SP1 ZFX ELF3 MNT NKRF POLR2A ZNF121 GTF2F1 ZNF687 ZSCAN21 ENSG00000267213 DPY19L3 LOC400684 ZNF507 CEP89 GPATCH1 GC19M032466
GH19J032404 Enhancer 0.6 ENCODE 600.7 +2.0 1989 0.2 EGR1 ZNF316 CTBP1 NFE2 MAFG ZNF514 KDM1A EMSY DPY19L3 LOC400684 CEP89 GPATCH1 ZNF507 ENSG00000267213 GC19M032380
GH19J032397 Enhancer 1.1 Ensembl ENCODE 0.4 +7.7 7685 1.4 ZNF121 ZBTB7A ZNF404 MZF1 ZNF680 ZNF560 ZNF704 ZNF488 ZNF221 ZBTB8A GPATCH1 CEP89 ZNF507 PDCD5 FAAP24 ENSG00000267213 LOC400684 GC19M032380
GH19J032386 Enhancer 1.1 Ensembl ENCODE 0.4 +17.8 17840 2.3 NFIB SP7 ZNF174 PKNOX1 ZNF300 ZNF600 PRDM10 ZIC2 ZEB2 ZNF776 GPATCH1 CEP89 ZNF507 PDCD5 ANKRD27 GC19M032380 LOC400684
GH19J032392 Enhancer 0.5 ENCODE 0.4 +12.5 12454 1.5 ZNF121 PRDM1 IKZF1 ZNF512 ZNF140 SP2 ZNF366 GPATCH1 ZNF507 CEP89 ENSG00000267213 SNORA68B LOC400684 GC19M032380
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400684 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC400684 Gene

Genomic Locations for LOC400684 Gene
chr19:32,390,050-32,405,539
(GRCh38/hg38)
Size:
15,490 bases
Orientation:
Minus strand

Genomic View for LOC400684 Gene

Genes around LOC400684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400684 Gene

Proteins for LOC400684 Gene

  • Protein details for LOC400684 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9BVU7-Q9BVU7_HUMAN
    Recommended name:
    LOC400684 protein
    Protein Accession:
    Q9BVU7

    Protein attributes for LOC400684 Gene

    Size:
    24 amino acids
    Molecular mass:
    2359 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC400684 Gene

Post-translational modifications for LOC400684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400684 Gene

Domains & Families for LOC400684 Gene

Protein Domains for LOC400684 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC400684 Gene

GenScript: Design optimal peptide antigens:
  • LOC400684 protein (Q9BVU7_HUMAN)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC400684: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC400684 Gene

Function for LOC400684 Gene

Phenotypes From GWAS Catalog for LOC400684 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400684 Gene

Localization for LOC400684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400684 Gene

Pathways & Interactions for LOC400684 Gene

PathCards logo

SuperPathways for LOC400684 Gene

No Data Available

Interacting Proteins for LOC400684 Gene

Gene Ontology (GO) - Biological Process for LOC400684 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400684 Gene

Drugs & Compounds for LOC400684 Gene

No Compound Related Data Available

Transcripts for LOC400684 Gene

mRNA/cDNA for LOC400684 Gene

(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) RNA Central transcripts :

Unigene Clusters for LOC400684 Gene

Uncharacterized LOC400684:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400684 Gene

No ASD Table

Relevant External Links for LOC400684 Gene

GeneLoc Exon Structure for
LOC400684

Expression for LOC400684 Gene

SOURCE GeneReport for Unigene cluster for LOC400684 Gene:

Hs.438766
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400684 Gene

Orthologs for LOC400684 Gene

No data available for Orthologs and Evolution for LOC400684 Gene

Paralogs for LOC400684 Gene

No data available for Paralogs for LOC400684 Gene

Variants for LOC400684 Gene

Sequence variations from dbSNP and Humsavar for LOC400684 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000091005 -- 32,393,690(-) C/G intron_variant
rs1000486903 -- 32,390,901(-) A/G intron_variant
rs1000490804 -- 32,404,028(-) /G intron_variant
rs1000526614 -- 32,394,146(-) A/G intron_variant
rs1000839273 -- 32,391,113(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400684 Gene

Disorders for LOC400684 Gene

No disorders were found for LOC400684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400684 Gene

Publications for LOC400684 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 13 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC400684 Gene

Products for LOC400684 Gene

Sources for LOC400684 Gene

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