Aliases for LOC400684 Gene

Subcategory (RNA class) for LOC400684 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC400684 Gene

  • Uncharacterized LOC400684 3
  • LOC400684 Protein 13
  • NONHSAG025455.2 91
  • HSALNG0125370 164

External Ids for LOC400684 Gene

Previous GeneCards Identifiers for LOC400684 Gene

  • GC19M037572
  • GC19U900634
  • GC19M032882

Summaries for LOC400684 Gene

GeneCards Summary for LOC400684 Gene

LOC400684 (Uncharacterized LOC400684) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC400684 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC400684 Gene

Genomics for LOC400684 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC400684 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032403 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.3 -348 4.5 SP1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 NFKBIZ KDM1A ZNF692 POLR2A ENSG00000267213 DPY19L3 LOC400684 ZNF507 CEP89 GPATCH1 piR-50444-224 PDCD5
GH19J032404 Enhancer 0.6 ENCODE 600.7 +2.0 1990 0.2 HMBOX1 EGR1 CTBP1 NFE2 ZNF316 MAFG ZNF514 ETV1 KDM1A GABPB1 DPY19L3 LOC400684 CEP89 GPATCH1 ZNF507 ENSG00000267213 piR-56580-015
GH19J032397 Enhancer 1 Ensembl ENCODE 0.4 +7.7 7674 1.5 ZNF221 ZNF629 ZNF501 ZNF341 RBAK ZNF140 ZNF639 KLF7 ZXDB ZNF157 piR-56580-015 GPATCH1 CEP89 ZNF507 PDCD5 FAAP24 ENSG00000267213 DPY19L3 LOC400684
GH19J032392 Enhancer 0.5 ENCODE 0.4 +12.5 12455 1.5 ZNF512 IKZF1 PRDM1 ZNF140 SP2 ZNF366 ZNF121 GPATCH1 ZNF507 CEP89 ENSG00000267213 SNORA68B piR-56580-015 DPY19L3 LOC400684
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC400684 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC400684 Gene

Genomic Locations for LOC400684 Gene
chr19:32,390,050-32,405,540
(GRCh38/hg38)
Size:
15,491 bases
Orientation:
Minus strand

Genomic View for LOC400684 Gene

Genes around LOC400684 on UCSC Golden Path with GeneCards custom track
LOC400684 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC400684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400684 Gene

Proteins for LOC400684 Gene

  • Protein details for LOC400684 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9BVU7-Q9BVU7_HUMAN
    Recommended name:
    LOC400684 protein
    Protein Accession:
    Q9BVU7

    Protein attributes for LOC400684 Gene

    Size:
    24 amino acids
    Molecular mass:
    2359 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC400684 Gene

Post-translational modifications for LOC400684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400684 Gene

Domains & Families for LOC400684 Gene

Protein Domains for LOC400684 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC400684 Gene

GenScript: Design optimal peptide antigens:
  • LOC400684 protein (Q9BVU7_HUMAN)
genes like me logo Genes that share domains with LOC400684: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC400684 Gene

Function for LOC400684 Gene

Phenotypes From GWAS Catalog for LOC400684 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400684 Gene

Localization for LOC400684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC400684 Gene

Pathways & Interactions for LOC400684 Gene

PathCards logo

SuperPathways for LOC400684 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC400684 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC400684 Gene

Drugs & Compounds for LOC400684 Gene

No Compound Related Data Available

Transcripts for LOC400684 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC400684 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A922_9606 lncRNA 951 1

RefSeq: NR_046201,

URS00009BB0BF_9606 lncRNA 1019 2

LncBook: HSALNT0258477,

NONCODE: NONHSAT180323.1,

LOC400684 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC400684 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400684 Gene

No ASD Table

Relevant External Links for LOC400684 Gene

GeneLoc Exon Structure for
LOC400684

Expression for LOC400684 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC400684 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC400684

SOURCE GeneReport for Unigene cluster for LOC400684 Gene:

Hs.438766
genes like me logo Genes that share expression patterns with LOC400684: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400684 Gene

Orthologs for LOC400684 Gene

No data available for Orthologs and Evolution for LOC400684 Gene

Paralogs for LOC400684 Gene

No data available for Paralogs for LOC400684 Gene

Variants for LOC400684 Gene

Additional dbSNP identifiers (rs#s) for LOC400684 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC400684 Gene

Disorders for LOC400684 Gene

No disorders were found for LOC400684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400684 Gene

Publications for LOC400684 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 13
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC400684 Gene

Products for LOC400684 Gene

Sources for LOC400684 Gene